miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8181 3' -56.9 NC_001978.2 + 19288 1.09 0.000497
Target:  5'- gUUCACUACUCGACCACGCCCGACGGCu -3'
miRNA:   3'- -AAGUGAUGAGCUGGUGCGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 17604 0.76 0.124132
Target:  5'- gUUgGCgGCUCGACCACGCCUGACa-- -3'
miRNA:   3'- -AAgUGaUGAGCUGGUGCGGGCUGccg -5'
8181 3' -56.9 NC_001978.2 + 7620 0.75 0.151032
Target:  5'- gUCGCgucgaACUCGACCACgcuGCCCGcACGGg -3'
miRNA:   3'- aAGUGa----UGAGCUGGUG---CGGGC-UGCCg -5'
8181 3' -56.9 NC_001978.2 + 35760 0.75 0.15964
Target:  5'- gUCGCccaGCUCGACCACuCCCGcCGGUu -3'
miRNA:   3'- aAGUGa--UGAGCUGGUGcGGGCuGCCG- -5'
8181 3' -56.9 NC_001978.2 + 30468 0.72 0.227044
Target:  5'- -aCGCUgaagcACUaCGACgAagaGCCCGACGGCg -3'
miRNA:   3'- aaGUGA-----UGA-GCUGgUg--CGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 12770 0.72 0.248269
Target:  5'- -aCGCUGC-CGACCggcauuacGCGCCCGACucagaacaccuauggGGCg -3'
miRNA:   3'- aaGUGAUGaGCUGG--------UGCGGGCUG---------------CCG- -5'
8181 3' -56.9 NC_001978.2 + 12248 0.72 0.252181
Target:  5'- gUCuCUccGCUCGACCAUGCCC-ACGuGCc -3'
miRNA:   3'- aAGuGA--UGAGCUGGUGCGGGcUGC-CG- -5'
8181 3' -56.9 NC_001978.2 + 6335 0.72 0.258813
Target:  5'- -aUACgUGCUCGACCACGugucgcgcauuCCCGAUcgGGCg -3'
miRNA:   3'- aaGUG-AUGAGCUGGUGC-----------GGGCUG--CCG- -5'
8181 3' -56.9 NC_001978.2 + 32760 0.71 0.266271
Target:  5'- cUUGC-GCUCGAaggacuuguaacagaUACGCCCGGCGGCu -3'
miRNA:   3'- aAGUGaUGAGCUg--------------GUGCGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 32888 0.71 0.294119
Target:  5'- -gCGCUACgUCGACCACGCCgacacUGAgcCGGUc -3'
miRNA:   3'- aaGUGAUG-AGCUGGUGCGG-----GCU--GCCG- -5'
8181 3' -56.9 NC_001978.2 + 18645 0.7 0.317049
Target:  5'- -aCGCUGC-CGGagaCGCGcCCCGACGGa -3'
miRNA:   3'- aaGUGAUGaGCUg--GUGC-GGGCUGCCg -5'
8181 3' -56.9 NC_001978.2 + 20310 0.7 0.33307
Target:  5'- -aCGCUucGCUCGACgguCAaggaaGCCCGcACGGCg -3'
miRNA:   3'- aaGUGA--UGAGCUG---GUg----CGGGC-UGCCG- -5'
8181 3' -56.9 NC_001978.2 + 8225 0.69 0.366864
Target:  5'- --gACUugUCGAgCuuGCCCGgACGGUa -3'
miRNA:   3'- aagUGAugAGCUgGugCGGGC-UGCCG- -5'
8181 3' -56.9 NC_001978.2 + 34235 0.69 0.384624
Target:  5'- -gCGC-ACUCGACgGCGCUcaguugcccaCGugGGCa -3'
miRNA:   3'- aaGUGaUGAGCUGgUGCGG----------GCugCCG- -5'
8181 3' -56.9 NC_001978.2 + 36077 0.69 0.393715
Target:  5'- gUUC-CUugUCGcACacaACGCCCGGguCGGCg -3'
miRNA:   3'- -AAGuGAugAGC-UGg--UGCGGGCU--GCCG- -5'
8181 3' -56.9 NC_001978.2 + 26529 0.68 0.402945
Target:  5'- gUCGCUGCcgaUCGAgUACGaCCCGAacgcccaGGCu -3'
miRNA:   3'- aAGUGAUG---AGCUgGUGC-GGGCUg------CCG- -5'
8181 3' -56.9 NC_001978.2 + 38628 0.68 0.41231
Target:  5'- aUC-CUGaaCGaauGCCGCGCCgGGCGGCu -3'
miRNA:   3'- aAGuGAUgaGC---UGGUGCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 34536 0.68 0.421808
Target:  5'- cUCGCcGgUcCGACCcUGCCgGACGGCu -3'
miRNA:   3'- aAGUGaUgA-GCUGGuGCGGgCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 2899 0.68 0.450081
Target:  5'- -gCACUcUUCGGgcgggggcacuccCCAgCGCUCGACGGCa -3'
miRNA:   3'- aaGUGAuGAGCU-------------GGU-GCGGGCUGCCG- -5'
8181 3' -56.9 NC_001978.2 + 18259 0.67 0.461075
Target:  5'- cUCACUcucuguaaggggGCgccaugggCGACCACagcaaGCCgGGCGGCa -3'
miRNA:   3'- aAGUGA------------UGa-------GCUGGUG-----CGGgCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.