Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8181 | 3' | -56.9 | NC_001978.2 | + | 5422 | 0.66 | 0.566592 |
Target: 5'- --aGCUACcCGGCCACGaCUCagcguuccaugGGCGGCu -3' miRNA: 3'- aagUGAUGaGCUGGUGC-GGG-----------CUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 7373 | 0.67 | 0.461075 |
Target: 5'- ---gUUGCguggCGACCGaauggaGCCUGACGGCc -3' miRNA: 3'- aaguGAUGa---GCUGGUg-----CGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 18259 | 0.67 | 0.461075 |
Target: 5'- cUCACUcucuguaaggggGCgccaugggCGACCACagcaaGCCgGGCGGCa -3' miRNA: 3'- aAGUGA------------UGa-------GCUGGUG-----CGGgCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 7891 | 0.67 | 0.502189 |
Target: 5'- ----gUGCUCGACC-CGggCGACGGCg -3' miRNA: 3'- aagugAUGAGCUGGuGCggGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 15627 | 0.66 | 0.509552 |
Target: 5'- gUUCAacgGCUCGACgguuccggcggcuuCGCugggGCUCGACGGCg -3' miRNA: 3'- -AAGUga-UGAGCUG--------------GUG----CGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 30020 | 0.66 | 0.523342 |
Target: 5'- cUCACgcgUugUCGcCCuuGCCCGuaagGCGGCu -3' miRNA: 3'- aAGUG---AugAGCuGGugCGGGC----UGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 40754 | 0.66 | 0.523342 |
Target: 5'- aUCGCUugGCUCGcauggcuuGCCGCGUUCGGCGuCa -3' miRNA: 3'- aAGUGA--UGAGC--------UGGUGCGGGCUGCcG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 25426 | 0.66 | 0.534047 |
Target: 5'- gUUCGg-GCUCGACguCGCCCaGGCugaGGCg -3' miRNA: 3'- -AAGUgaUGAGCUGguGCGGG-CUG---CCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 35653 | 0.66 | 0.555679 |
Target: 5'- -gCGCccaGCUCGACCcCGaagaCCGGuCGGCa -3' miRNA: 3'- aaGUGa--UGAGCUGGuGCg---GGCU-GCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 2899 | 0.68 | 0.450081 |
Target: 5'- -gCACUcUUCGGgcgggggcacuccCCAgCGCUCGACGGCa -3' miRNA: 3'- aaGUGAuGAGCU-------------GGU-GCGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 34536 | 0.68 | 0.421808 |
Target: 5'- cUCGCcGgUcCGACCcUGCCgGACGGCu -3' miRNA: 3'- aAGUGaUgA-GCUGGuGCGGgCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 38628 | 0.68 | 0.41231 |
Target: 5'- aUC-CUGaaCGaauGCCGCGCCgGGCGGCu -3' miRNA: 3'- aAGuGAUgaGC---UGGUGCGGgCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 17604 | 0.76 | 0.124132 |
Target: 5'- gUUgGCgGCUCGACCACGCCUGACa-- -3' miRNA: 3'- -AAgUGaUGAGCUGGUGCGGGCUGccg -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 35760 | 0.75 | 0.15964 |
Target: 5'- gUCGCccaGCUCGACCACuCCCGcCGGUu -3' miRNA: 3'- aAGUGa--UGAGCUGGUGcGGGCuGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 30468 | 0.72 | 0.227044 |
Target: 5'- -aCGCUgaagcACUaCGACgAagaGCCCGACGGCg -3' miRNA: 3'- aaGUGA-----UGA-GCUGgUg--CGGGCUGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 12770 | 0.72 | 0.248269 |
Target: 5'- -aCGCUGC-CGACCggcauuacGCGCCCGACucagaacaccuauggGGCg -3' miRNA: 3'- aaGUGAUGaGCUGG--------UGCGGGCUG---------------CCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 6335 | 0.72 | 0.258813 |
Target: 5'- -aUACgUGCUCGACCACGugucgcgcauuCCCGAUcgGGCg -3' miRNA: 3'- aaGUG-AUGAGCUGGUGC-----------GGGCUG--CCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 32888 | 0.71 | 0.294119 |
Target: 5'- -gCGCUACgUCGACCACGCCgacacUGAgcCGGUc -3' miRNA: 3'- aaGUGAUG-AGCUGGUGCGG-----GCU--GCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 20310 | 0.7 | 0.33307 |
Target: 5'- -aCGCUucGCUCGACgguCAaggaaGCCCGcACGGCg -3' miRNA: 3'- aaGUGA--UGAGCUG---GUg----CGGGC-UGCCG- -5' |
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8181 | 3' | -56.9 | NC_001978.2 | + | 26529 | 0.68 | 0.402945 |
Target: 5'- gUCGCUGCcgaUCGAgUACGaCCCGAacgcccaGGCu -3' miRNA: 3'- aAGUGAUG---AGCUgGUGC-GGGCUg------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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