miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8184 3' -48 NC_001978.2 + 20423 1.11 0.00323
Target:  5'- cGUCGCCGAAGACUUCAACGACAUUGAa -3'
miRNA:   3'- -CAGCGGCUUCUGAAGUUGCUGUAACU- -5'
8184 3' -48 NC_001978.2 + 15558 0.78 0.374765
Target:  5'- uGUUGCgGAAGGCUUCAcCGGCAcUGAg -3'
miRNA:   3'- -CAGCGgCUUCUGAAGUuGCUGUaACU- -5'
8184 3' -48 NC_001978.2 + 20486 0.78 0.393943
Target:  5'- uGUCGuuGAAGuCUUCGGCGACGUcGGc -3'
miRNA:   3'- -CAGCggCUUCuGAAGUUGCUGUAaCU- -5'
8184 3' -48 NC_001978.2 + 39684 0.76 0.521087
Target:  5'- -aCGCCGAAGGCgaCGAagaGACGUUGGc -3'
miRNA:   3'- caGCGGCUUCUGaaGUUg--CUGUAACU- -5'
8184 3' -48 NC_001978.2 + 32973 0.73 0.63762
Target:  5'- -aCGCCGAAGcGCUUCAggcguACGACGcUGGg -3'
miRNA:   3'- caGCGGCUUC-UGAAGU-----UGCUGUaACU- -5'
8184 3' -48 NC_001978.2 + 17800 0.73 0.661218
Target:  5'- cGUCGCCGAAGccCUUCG-CGACAa--- -3'
miRNA:   3'- -CAGCGGCUUCu-GAAGUuGCUGUaacu -5'
8184 3' -48 NC_001978.2 + 3334 0.73 0.684691
Target:  5'- uUCGCCGGaaGGugUUUGaggcguACGACAUUGAc -3'
miRNA:   3'- cAGCGGCU--UCugAAGU------UGCUGUAACU- -5'
8184 3' -48 NC_001978.2 + 18429 0.71 0.753275
Target:  5'- -aCGCCGAcaaGGGCgaCGACGACGgacgUGAc -3'
miRNA:   3'- caGCGGCU---UCUGaaGUUGCUGUa---ACU- -5'
8184 3' -48 NC_001978.2 + 4213 0.71 0.76429
Target:  5'- -cCGCCGGAGGC-UCAAUGGCuggggGAg -3'
miRNA:   3'- caGCGGCUUCUGaAGUUGCUGuaa--CU- -5'
8184 3' -48 NC_001978.2 + 17738 0.71 0.796343
Target:  5'- uGUCGCgaAGGGCUUCGGCGACGc--- -3'
miRNA:   3'- -CAGCGgcUUCUGAAGUUGCUGUaacu -5'
8184 3' -48 NC_001978.2 + 25547 0.7 0.816746
Target:  5'- -cCGCUGAAGGgaUUCGACGGCG-UGAc -3'
miRNA:   3'- caGCGGCUUCUg-AAGUUGCUGUaACU- -5'
8184 3' -48 NC_001978.2 + 35797 0.69 0.854777
Target:  5'- cGUUGCCaAGGGCUUCGcauggcGCGGCAgcgUGGc -3'
miRNA:   3'- -CAGCGGcUUCUGAAGU------UGCUGUa--ACU- -5'
8184 3' -48 NC_001978.2 + 24088 0.69 0.854777
Target:  5'- gGUCGCCGAcguacaGGGCUUCAcccGCGuaguCAgUGAc -3'
miRNA:   3'- -CAGCGGCU------UCUGAAGU---UGCu---GUaACU- -5'
8184 3' -48 NC_001978.2 + 35807 0.69 0.86364
Target:  5'- -aCGCCGAAGAC---GACGGCAagguucUUGAc -3'
miRNA:   3'- caGCGGCUUCUGaagUUGCUGU------AACU- -5'
8184 3' -48 NC_001978.2 + 13809 0.69 0.879706
Target:  5'- cGUCGCUGAAGgacugcacgacguGCUUCGuCGGCAUg-- -3'
miRNA:   3'- -CAGCGGCUUC-------------UGAAGUuGCUGUAacu -5'
8184 3' -48 NC_001978.2 + 21490 0.69 0.880523
Target:  5'- cGUCGCUGAGucCUUCAguACGGCGUg-- -3'
miRNA:   3'- -CAGCGGCUUcuGAAGU--UGCUGUAacu -5'
8184 3' -48 NC_001978.2 + 8460 0.68 0.89623
Target:  5'- uUCGCUGAccauuGACgagaUCGACGcCAUUGAa -3'
miRNA:   3'- cAGCGGCUu----CUGa---AGUUGCuGUAACU- -5'
8184 3' -48 NC_001978.2 + 30730 0.68 0.903626
Target:  5'- gGUCGCUGggGACcgUCAGC-ACGUc-- -3'
miRNA:   3'- -CAGCGGCuuCUGa-AGUUGcUGUAacu -5'
8184 3' -48 NC_001978.2 + 17583 0.68 0.91071
Target:  5'- -gCGaCCGgcGACgUUGGCGACGUUGGc -3'
miRNA:   3'- caGC-GGCuuCUGaAGUUGCUGUAACU- -5'
8184 3' -48 NC_001978.2 + 11831 0.68 0.91748
Target:  5'- -aCGCCGAAGGCUc---CGACAUUc- -3'
miRNA:   3'- caGCGGCUUCUGAaguuGCUGUAAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.