Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8184 | 3' | -48 | NC_001978.2 | + | 2909 | 0.67 | 0.930066 |
Target: 5'- --gGCgGggGcACUccccagcgcUCGACGGCAUUGAg -3' miRNA: 3'- cagCGgCuuC-UGA---------AGUUGCUGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 3049 | 0.66 | 0.967919 |
Target: 5'- cUCGCCGGAaGCcgCAACGGCGc--- -3' miRNA: 3'- cAGCGGCUUcUGaaGUUGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 3334 | 0.73 | 0.684691 |
Target: 5'- uUCGCCGGaaGGugUUUGaggcguACGACAUUGAc -3' miRNA: 3'- cAGCGGCU--UCugAAGU------UGCUGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 4213 | 0.71 | 0.76429 |
Target: 5'- -cCGCCGGAGGC-UCAAUGGCuggggGAg -3' miRNA: 3'- caGCGGCUUCUGaAGUUGCUGuaa--CU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 7199 | 0.66 | 0.955558 |
Target: 5'- -aCGCCGGAGccgguucGCUUCugacGGCGGCGUUcGAc -3' miRNA: 3'- caGCGGCUUC-------UGAAG----UUGCUGUAA-CU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 8133 | 0.66 | 0.951435 |
Target: 5'- uUCGCCGGAagccuuguuGGCUUCAcgcACGGCcUUGu -3' miRNA: 3'- cAGCGGCUU---------CUGAAGU---UGCUGuAACu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 8460 | 0.68 | 0.89623 |
Target: 5'- uUCGCUGAccauuGACgagaUCGACGcCAUUGAa -3' miRNA: 3'- cAGCGGCUu----CUGa---AGUUGCuGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 11831 | 0.68 | 0.91748 |
Target: 5'- -aCGCCGAAGGCUc---CGACAUUc- -3' miRNA: 3'- caGCGGCUUCUGAaguuGCUGUAAcu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 12389 | 0.67 | 0.94138 |
Target: 5'- -gUGCCGAAGGCgUCGACcACGUUc- -3' miRNA: 3'- caGCGGCUUCUGaAGUUGcUGUAAcu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 13481 | 0.67 | 0.923932 |
Target: 5'- cUUGCCGAAGAUgaCGGCGGCu---- -3' miRNA: 3'- cAGCGGCUUCUGaaGUUGCUGuaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 13809 | 0.69 | 0.879706 |
Target: 5'- cGUCGCUGAAGgacugcacgacguGCUUCGuCGGCAUg-- -3' miRNA: 3'- -CAGCGGCUUC-------------UGAAGUuGCUGUAacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 15558 | 0.78 | 0.374765 |
Target: 5'- uGUUGCgGAAGGCUUCAcCGGCAcUGAg -3' miRNA: 3'- -CAGCGgCUUCUGAAGUuGCUGUaACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 17583 | 0.68 | 0.91071 |
Target: 5'- -gCGaCCGgcGACgUUGGCGACGUUGGc -3' miRNA: 3'- caGC-GGCuuCUGaAGUUGCUGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 17738 | 0.71 | 0.796343 |
Target: 5'- uGUCGCgaAGGGCUUCGGCGACGc--- -3' miRNA: 3'- -CAGCGgcUUCUGAAGUUGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 17800 | 0.73 | 0.661218 |
Target: 5'- cGUCGCCGAAGccCUUCG-CGACAa--- -3' miRNA: 3'- -CAGCGGCUUCu-GAAGUuGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 18429 | 0.71 | 0.753275 |
Target: 5'- -aCGCCGAcaaGGGCgaCGACGACGgacgUGAc -3' miRNA: 3'- caGCGGCU---UCUGaaGUUGCUGUa---ACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 19034 | 0.67 | 0.930066 |
Target: 5'- -aCGCuCGAAGACcUCAACcgGAuCGUUGAc -3' miRNA: 3'- caGCG-GCUUCUGaAGUUG--CU-GUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 20423 | 1.11 | 0.00323 |
Target: 5'- cGUCGCCGAAGACUUCAACGACAUUGAa -3' miRNA: 3'- -CAGCGGCUUCUGAAGUUGCUGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 20486 | 0.78 | 0.393943 |
Target: 5'- uGUCGuuGAAGuCUUCGGCGACGUcGGc -3' miRNA: 3'- -CAGCggCUUCuGAAGUUGCUGUAaCU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 21490 | 0.69 | 0.880523 |
Target: 5'- cGUCGCUGAGucCUUCAguACGGCGUg-- -3' miRNA: 3'- -CAGCGGCUUcuGAAGU--UGCUGUAacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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