Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8184 | 3' | -48 | NC_001978.2 | + | 23630 | 0.66 | 0.956001 |
Target: 5'- -cUGCaCGAAGcCgaaGACGACGUUGAg -3' miRNA: 3'- caGCG-GCUUCuGaagUUGCUGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 24088 | 0.69 | 0.854777 |
Target: 5'- gGUCGCCGAcguacaGGGCUUCAcccGCGuaguCAgUGAc -3' miRNA: 3'- -CAGCGGCU------UCUGAAGU---UGCu---GUaACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 25547 | 0.7 | 0.816746 |
Target: 5'- -cCGCUGAAGGgaUUCGACGGCG-UGAc -3' miRNA: 3'- caGCGGCUUCUg-AAGUUGCUGUaACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 27955 | 0.67 | 0.946563 |
Target: 5'- gGUCGacaCGAAGAUUaaGGCGACGcUGAu -3' miRNA: 3'- -CAGCg--GCUUCUGAagUUGCUGUaACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 30730 | 0.68 | 0.903626 |
Target: 5'- gGUCGCUGggGACcgUCAGC-ACGUc-- -3' miRNA: 3'- -CAGCGGCuuCUGa-AGUUGcUGUAacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 31664 | 0.67 | 0.946563 |
Target: 5'- uUCGCCGAcGACgcccuuuAUGACAUUGc -3' miRNA: 3'- cAGCGGCUuCUGaagu---UGCUGUAACu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 32973 | 0.73 | 0.63762 |
Target: 5'- -aCGCCGAAGcGCUUCAggcguACGACGcUGGg -3' miRNA: 3'- caGCGGCUUC-UGAAGU-----UGCUGUaACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 35702 | 0.66 | 0.956001 |
Target: 5'- --aGCCGGAGACg--GACGACAc--- -3' miRNA: 3'- cagCGGCUUCUGaagUUGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 35797 | 0.69 | 0.854777 |
Target: 5'- cGUUGCCaAGGGCUUCGcauggcGCGGCAgcgUGGc -3' miRNA: 3'- -CAGCGGcUUCUGAAGU------UGCUGUa--ACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 35807 | 0.69 | 0.86364 |
Target: 5'- -aCGCCGAAGAC---GACGGCAagguucUUGAc -3' miRNA: 3'- caGCGGCUUCUGaagUUGCUGU------AACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 36136 | 0.66 | 0.967919 |
Target: 5'- -cCGCCGGucccguuugGGACUUgAGCGGCGg--- -3' miRNA: 3'- caGCGGCU---------UCUGAAgUUGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 39684 | 0.76 | 0.521087 |
Target: 5'- -aCGCCGAAGGCgaCGAagaGACGUUGGc -3' miRNA: 3'- caGCGGCUUCUGaaGUUg--CUGUAACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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