Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8184 | 3' | -48 | NC_001978.2 | + | 17583 | 0.68 | 0.91071 |
Target: 5'- -gCGaCCGgcGACgUUGGCGACGUUGGc -3' miRNA: 3'- caGC-GGCuuCUGaAGUUGCUGUAACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 17800 | 0.73 | 0.661218 |
Target: 5'- cGUCGCCGAAGccCUUCG-CGACAa--- -3' miRNA: 3'- -CAGCGGCUUCu-GAAGUuGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 18429 | 0.71 | 0.753275 |
Target: 5'- -aCGCCGAcaaGGGCgaCGACGACGgacgUGAc -3' miRNA: 3'- caGCGGCU---UCUGaaGUUGCUGUa---ACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 4213 | 0.71 | 0.76429 |
Target: 5'- -cCGCCGGAGGC-UCAAUGGCuggggGAg -3' miRNA: 3'- caGCGGCUUCUGaAGUUGCUGuaa--CU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 35797 | 0.69 | 0.854777 |
Target: 5'- cGUUGCCaAGGGCUUCGcauggcGCGGCAgcgUGGc -3' miRNA: 3'- -CAGCGGcUUCUGAAGU------UGCUGUa--ACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 24088 | 0.69 | 0.854777 |
Target: 5'- gGUCGCCGAcguacaGGGCUUCAcccGCGuaguCAgUGAc -3' miRNA: 3'- -CAGCGGCU------UCUGAAGU---UGCu---GUaACU- -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 13809 | 0.69 | 0.879706 |
Target: 5'- cGUCGCUGAAGgacugcacgacguGCUUCGuCGGCAUg-- -3' miRNA: 3'- -CAGCGGCUUC-------------UGAAGUuGCUGUAacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 21490 | 0.69 | 0.880523 |
Target: 5'- cGUCGCUGAGucCUUCAguACGGCGUg-- -3' miRNA: 3'- -CAGCGGCUUcuGAAGU--UGCUGUAacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 30730 | 0.68 | 0.903626 |
Target: 5'- gGUCGCUGggGACcgUCAGC-ACGUc-- -3' miRNA: 3'- -CAGCGGCuuCUGa-AGUUGcUGUAacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 8133 | 0.66 | 0.951435 |
Target: 5'- uUCGCCGGAagccuuguuGGCUUCAcgcACGGCcUUGu -3' miRNA: 3'- cAGCGGCUU---------CUGAAGU---UGCUGuAACu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 3049 | 0.66 | 0.967919 |
Target: 5'- cUCGCCGGAaGCcgCAACGGCGc--- -3' miRNA: 3'- cAGCGGCUUcUGaaGUUGCUGUaacu -5' |
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8184 | 3' | -48 | NC_001978.2 | + | 20486 | 0.78 | 0.393943 |
Target: 5'- uGUCGuuGAAGuCUUCGGCGACGUcGGc -3' miRNA: 3'- -CAGCggCUUCuGAAGUUGCUGUAaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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