miRNA display CGI


Results 41 - 60 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8185 5' -53 NC_001978.2 + 10169 0.68 0.66899
Target:  5'- aGCAAGcccuagcacACG-CGAAGGuCGUUGCCGg -3'
miRNA:   3'- gCGUUC---------UGCuGCUUCUuGCGACGGCg -5'
8185 5' -53 NC_001978.2 + 16763 0.68 0.66899
Target:  5'- aGCGGaACGGCGccGAcauGCGUUGaCCGCa -3'
miRNA:   3'- gCGUUcUGCUGCuuCU---UGCGAC-GGCG- -5'
8185 5' -53 NC_001978.2 + 21892 0.68 0.657701
Target:  5'- --aGGGugGACGuAGaAGCGCgaGCCGCc -3'
miRNA:   3'- gcgUUCugCUGCuUC-UUGCGa-CGGCG- -5'
8185 5' -53 NC_001978.2 + 28690 0.68 0.656571
Target:  5'- aCGCAcgGGGCGcauguccaucaACGgcGAcuucgcggcucaaACGCUGCCGUc -3'
miRNA:   3'- -GCGU--UCUGC-----------UGCuuCU-------------UGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 33421 0.68 0.63506
Target:  5'- gGCGGGuACGGCuacgggccGAAGAaagaccgcGCGCUgaGCCGCa -3'
miRNA:   3'- gCGUUC-UGCUG--------CUUCU--------UGCGA--CGGCG- -5'
8185 5' -53 NC_001978.2 + 11774 0.68 0.631661
Target:  5'- cCGCAuccgugaucacgauGGAagGGCGAGccgcAACGCUGCCGUa -3'
miRNA:   3'- -GCGU--------------UCUg-CUGCUUc---UUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 31048 0.69 0.628262
Target:  5'- uGCuGAGGCGcuugccgcugugcuCGAAGc-CGCUGCCGCu -3'
miRNA:   3'- gCG-UUCUGCu-------------GCUUCuuGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 16986 0.69 0.62373
Target:  5'- gGCAAG-C-ACGucGGACGCUGCCu- -3'
miRNA:   3'- gCGUUCuGcUGCuuCUUGCGACGGcg -5'
8185 5' -53 NC_001978.2 + 4222 0.69 0.616935
Target:  5'- gGCAacugaagaAGAUGACGAAGAcgACGCgugagcuucguuucGCCGUc -3'
miRNA:   3'- gCGU--------UCUGCUGCUUCU--UGCGa-------------CGGCG- -5'
8185 5' -53 NC_001978.2 + 9567 0.69 0.601103
Target:  5'- gCGCGGGugGCGACGAAguGAACGC-GgCGUa -3'
miRNA:   3'- -GCGUUC--UGCUGCUU--CUUGCGaCgGCG- -5'
8185 5' -53 NC_001978.2 + 32297 0.69 0.601103
Target:  5'- gCGCuucGCGAau-GGcGCGCUGCCGCu -3'
miRNA:   3'- -GCGuucUGCUgcuUCuUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 23881 0.69 0.589827
Target:  5'- gGCuuccGGCGACGccgggucGAGCGCUGCCa- -3'
miRNA:   3'- gCGuu--CUGCUGCuu-----CUUGCGACGGcg -5'
8185 5' -53 NC_001978.2 + 28901 0.69 0.578588
Target:  5'- gCGCuucACGuCGgcGAGCGCUGCCa- -3'
miRNA:   3'- -GCGuucUGCuGCuuCUUGCGACGGcg -5'
8185 5' -53 NC_001978.2 + 30351 0.7 0.567397
Target:  5'- gGCAAG-CGACucagcaAGGAACGCgccgaaGCCGCc -3'
miRNA:   3'- gCGUUCuGCUGc-----UUCUUGCGa-----CGGCG- -5'
8185 5' -53 NC_001978.2 + 1765 0.7 0.565165
Target:  5'- aCGCcGGACGGCaacagggcuuGAACcCUGCCGCu -3'
miRNA:   3'- -GCGuUCUGCUGcuu-------CUUGcGACGGCG- -5'
8185 5' -53 NC_001978.2 + 20759 0.7 0.556261
Target:  5'- gCGCGA-ACGAgGGAGuuguGCGCccccUGCCGCu -3'
miRNA:   3'- -GCGUUcUGCUgCUUCu---UGCG----ACGGCG- -5'
8185 5' -53 NC_001978.2 + 41306 0.7 0.556261
Target:  5'- uGCAuuGGGCGGCGAAGA-CGUUGaagGCa -3'
miRNA:   3'- gCGU--UCUGCUGCUUCUuGCGACgg-CG- -5'
8185 5' -53 NC_001978.2 + 6741 0.7 0.545189
Target:  5'- gGCAauccGGuCGACGcuGAGCGC-GCCGUg -3'
miRNA:   3'- gCGU----UCuGCUGCuuCUUGCGaCGGCG- -5'
8185 5' -53 NC_001978.2 + 16285 0.7 0.534189
Target:  5'- aCGuUggGGCGcucgccacuucaACGAAGAACGCUGCgGa -3'
miRNA:   3'- -GC-GuuCUGC------------UGCUUCUUGCGACGgCg -5'
8185 5' -53 NC_001978.2 + 3067 0.7 0.534189
Target:  5'- uGUcgGAGACGAUugcc-ACGCUGCCGCu -3'
miRNA:   3'- gCG--UUCUGCUGcuucuUGCGACGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.