miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8185 5' -53 NC_001978.2 + 20612 1.12 0.000794
Target:  5'- gCGCAAGACGACGAAGAACGCUGCCGCu -3'
miRNA:   3'- -GCGUUCUGCUGCUUCUUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 18710 0.85 0.068815
Target:  5'- aGCGGGuCGAUucGGAGCGCUGCCGCc -3'
miRNA:   3'- gCGUUCuGCUGcuUCUUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 7830 0.83 0.089783
Target:  5'- gGCAGGAUGcCGAAGAACGUUGCCu- -3'
miRNA:   3'- gCGUUCUGCuGCUUCUUGCGACGGcg -5'
8185 5' -53 NC_001978.2 + 39684 0.81 0.116729
Target:  5'- aCGCcgAAGGCGACGAAGAGaCGUUGgCGCu -3'
miRNA:   3'- -GCG--UUCUGCUGCUUCUU-GCGACgGCG- -5'
8185 5' -53 NC_001978.2 + 32328 0.8 0.130988
Target:  5'- aCGCAAGACGGCGucacAGAagcGCGCUGaaGCg -3'
miRNA:   3'- -GCGUUCUGCUGCu---UCU---UGCGACggCG- -5'
8185 5' -53 NC_001978.2 + 30630 0.8 0.134796
Target:  5'- gGCGAGACGAcucCGgcGGACGUUGCgGCg -3'
miRNA:   3'- gCGUUCUGCU---GCuuCUUGCGACGgCG- -5'
8185 5' -53 NC_001978.2 + 13085 0.77 0.222808
Target:  5'- gGCGAGACG-Cu--GAACGCUGCCGg -3'
miRNA:   3'- gCGUUCUGCuGcuuCUUGCGACGGCg -5'
8185 5' -53 NC_001978.2 + 35702 0.76 0.235157
Target:  5'- aGCcgGAGACgGACGAcacGGccACGCUGCCGCg -3'
miRNA:   3'- gCG--UUCUG-CUGCU---UCu-UGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 15395 0.74 0.321564
Target:  5'- aGCGGGAaGACGAAcgccGACGUUGCCGUu -3'
miRNA:   3'- gCGUUCUgCUGCUUc---UUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 28464 0.73 0.400643
Target:  5'- aGCGgacGGACGGCGGAGcacugaaggucGACaaggccguguuGCUGCCGCu -3'
miRNA:   3'- gCGU---UCUGCUGCUUC-----------UUG-----------CGACGGCG- -5'
8185 5' -53 NC_001978.2 + 17598 0.72 0.410163
Target:  5'- aGCGuccGGGuCGGCGGAG-ACGgaGCCGCc -3'
miRNA:   3'- gCGU---UCU-GCUGCUUCuUGCgaCGGCG- -5'
8185 5' -53 NC_001978.2 + 38591 0.72 0.418851
Target:  5'- gGCGuucgGGACGGCGGAgcgcccggaguucGAACGCauccugaacgaaUGCCGCg -3'
miRNA:   3'- gCGU----UCUGCUGCUU-------------CUUGCG------------ACGGCG- -5'
8185 5' -53 NC_001978.2 + 24402 0.72 0.419823
Target:  5'- uGCccuGGGCGACGugcGAGCGCUGaaGCc -3'
miRNA:   3'- gCGu--UCUGCUGCuu-CUUGCGACggCG- -5'
8185 5' -53 NC_001978.2 + 13106 0.72 0.42962
Target:  5'- gGUAcGGCGACGGuaGGAaugccgcucgACGCUGCCGa -3'
miRNA:   3'- gCGUuCUGCUGCU--UCU----------UGCGACGGCg -5'
8185 5' -53 NC_001978.2 + 4022 0.72 0.42962
Target:  5'- aGCAu--UGACGAAGuGCGC-GCCGCu -3'
miRNA:   3'- gCGUucuGCUGCUUCuUGCGaCGGCG- -5'
8185 5' -53 NC_001978.2 + 1589 0.72 0.439549
Target:  5'- -cCGGGGCGACGcucagcgacAGAucauCGCUGCCGCc -3'
miRNA:   3'- gcGUUCUGCUGCu--------UCUu---GCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 33654 0.72 0.439549
Target:  5'- gGCAAGACGACGA----CGCUucaGCCGg -3'
miRNA:   3'- gCGUUCUGCUGCUucuuGCGA---CGGCg -5'
8185 5' -53 NC_001978.2 + 18892 0.71 0.459794
Target:  5'- cCGCAGcgucGAUaGCGggGAACGCcGCgCGCa -3'
miRNA:   3'- -GCGUU----CUGcUGCuuCUUGCGaCG-GCG- -5'
8185 5' -53 NC_001978.2 + 19412 0.71 0.4701
Target:  5'- cCGCuGAGGCGgagcGCGAAGAGCGcCUGaaCCGUg -3'
miRNA:   3'- -GCG-UUCUGC----UGCUUCUUGC-GAC--GGCG- -5'
8185 5' -53 NC_001978.2 + 1529 0.71 0.480523
Target:  5'- gCGCAAGaACGG-GAAGAGCaccauuGCcGCCGCg -3'
miRNA:   3'- -GCGUUC-UGCUgCUUCUUG------CGaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.