miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8185 5' -53 NC_001978.2 + 144 0.67 0.718063
Target:  5'- aGUGAGuCGAgCGAagagcccggagcuucGGAccgggaacgccaACGCUGCCGCu -3'
miRNA:   3'- gCGUUCuGCU-GCU---------------UCU------------UGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 999 0.66 0.777852
Target:  5'- gGCgGGGGCGACGAcccGGAAgGCUucccagcaaGCgGCg -3'
miRNA:   3'- gCG-UUCUGCUGCU---UCUUgCGA---------CGgCG- -5'
8185 5' -53 NC_001978.2 + 1529 0.71 0.480523
Target:  5'- gCGCAAGaACGG-GAAGAGCaccauuGCcGCCGCg -3'
miRNA:   3'- -GCGUUC-UGCUgCUUCUUG------CGaCGGCG- -5'
8185 5' -53 NC_001978.2 + 1589 0.72 0.439549
Target:  5'- -cCGGGGCGACGcucagcgacAGAucauCGCUGCCGCc -3'
miRNA:   3'- gcGUUCUGCUGCu--------UCUu---GCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 1765 0.7 0.565165
Target:  5'- aCGCcGGACGGCaacagggcuuGAACcCUGCCGCu -3'
miRNA:   3'- -GCGuUCUGCUGcuu-------CUUGcGACGGCG- -5'
8185 5' -53 NC_001978.2 + 2161 0.67 0.724643
Target:  5'- gCGCGGuGCGuCGAc-AugGUUGCCGCa -3'
miRNA:   3'- -GCGUUcUGCuGCUucUugCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 2784 0.67 0.691445
Target:  5'- gGgAAGACGACGAAGGcaACGUcuUCGUg -3'
miRNA:   3'- gCgUUCUGCUGCUUCU--UGCGacGGCG- -5'
8185 5' -53 NC_001978.2 + 3067 0.7 0.534189
Target:  5'- uGUcgGAGACGAUugcc-ACGCUGCCGCu -3'
miRNA:   3'- gCG--UUCUGCUGcuucuUGCGACGGCG- -5'
8185 5' -53 NC_001978.2 + 3573 0.68 0.684729
Target:  5'- gGCAcGAUGAgCGAAGAggguuuggcccgugcGCGCgaagcguggcgUGCCGCu -3'
miRNA:   3'- gCGUuCUGCU-GCUUCU---------------UGCG-----------ACGGCG- -5'
8185 5' -53 NC_001978.2 + 4022 0.72 0.42962
Target:  5'- aGCAu--UGACGAAGuGCGC-GCCGCu -3'
miRNA:   3'- gCGUucuGCUGCUUCuUGCGaCGGCG- -5'
8185 5' -53 NC_001978.2 + 4106 0.67 0.713658
Target:  5'- gGCgAAGuCGGCGAAGAGcCGgaGCCu- -3'
miRNA:   3'- gCG-UUCuGCUGCUUCUU-GCgaCGGcg -5'
8185 5' -53 NC_001978.2 + 4169 0.66 0.767481
Target:  5'- gCGgAAGAgccgGACGAAGAGcCGgaGCCGg -3'
miRNA:   3'- -GCgUUCUg---CUGCUUCUU-GCgaCGGCg -5'
8185 5' -53 NC_001978.2 + 4222 0.69 0.616935
Target:  5'- gGCAacugaagaAGAUGACGAAGAcgACGCgugagcuucguuucGCCGUc -3'
miRNA:   3'- gCGU--------UCUGCUGCUUCU--UGCGa-------------CGGCG- -5'
8185 5' -53 NC_001978.2 + 4480 0.67 0.713658
Target:  5'- uGCGAGuCGGCGAAGAcCGUgaagGCgGa -3'
miRNA:   3'- gCGUUCuGCUGCUUCUuGCGa---CGgCg -5'
8185 5' -53 NC_001978.2 + 4515 0.66 0.746307
Target:  5'- cCGgAAGACGuGCGccccaguaGGGAACGCgUGUCGUg -3'
miRNA:   3'- -GCgUUCUGC-UGC--------UUCUUGCG-ACGGCG- -5'
8185 5' -53 NC_001978.2 + 6741 0.7 0.545189
Target:  5'- gGCAauccGGuCGACGcuGAGCGC-GCCGUg -3'
miRNA:   3'- gCGU----UCuGCUGCuuCUUGCGaCGGCG- -5'
8185 5' -53 NC_001978.2 + 7830 0.83 0.089783
Target:  5'- gGCAGGAUGcCGAAGAACGUUGCCu- -3'
miRNA:   3'- gCGUUCUGCuGCUUCUUGCGACGGcg -5'
8185 5' -53 NC_001978.2 + 9270 0.7 0.522182
Target:  5'- uCGCGacgguccuGGGCGACGAAGuugggccGACGUcgaaUGCCGUu -3'
miRNA:   3'- -GCGU--------UCUGCUGCUUC-------UUGCG----ACGGCG- -5'
8185 5' -53 NC_001978.2 + 9567 0.69 0.601103
Target:  5'- gCGCGGGugGCGACGAAguGAACGC-GgCGUa -3'
miRNA:   3'- -GCGUUC--UGCUGCUU--CUUGCGaCgGCG- -5'
8185 5' -53 NC_001978.2 + 9618 0.67 0.73553
Target:  5'- gCGcCGAGAUGACGAAGGccauugcccaGgGCggaccgGUCGCg -3'
miRNA:   3'- -GC-GUUCUGCUGCUUCU----------UgCGa-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.