Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8186 | 3' | -54.1 | NC_001978.2 | + | 3977 | 0.66 | 0.709997 |
Target: 5'- aCGAACcuGAAGCGGucGGcCGucucGGCGa -3' miRNA: 3'- -GCUUGcuCUUCGCCuuCC-GCuu--CCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 5198 | 0.66 | 0.731777 |
Target: 5'- uCGAGuucgccccUGAGAAGCGcGAcGGCacGAAGGCc -3' miRNA: 3'- -GCUU--------GCUCUUCGC-CUuCCG--CUUCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 19392 | 0.66 | 0.717661 |
Target: 5'- gCGGugcGCGAagauccuugccgcuGAGGCGGAGcGCGAAGaGCGc -3' miRNA: 3'- -GCU---UGCU--------------CUUCGCCUUcCGCUUC-CGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 33907 | 0.66 | 0.698981 |
Target: 5'- -cGACGuGuuGGCGGAGcaucGGgGGAGGCGa -3' miRNA: 3'- gcUUGCuCu-UCGCCUU----CCgCUUCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 4193 | 0.66 | 0.731777 |
Target: 5'- ----gGGGGAGCGGGggcAGGCucAGGCu -3' miRNA: 3'- gcuugCUCUUCGCCU---UCCGcuUCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 4178 | 0.67 | 0.654356 |
Target: 5'- cCGGACGAagagccGGAGcCGGAAGGCaagccggacgacGAAGGgGc -3' miRNA: 3'- -GCUUGCU------CUUC-GCCUUCCG------------CUUCCgC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 28469 | 0.67 | 0.676757 |
Target: 5'- aCGGACGGcGGAGCacuGAAGGuCGAcaAGGCc -3' miRNA: 3'- -GCUUGCU-CUUCGc--CUUCC-GCU--UCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 24767 | 0.67 | 0.665572 |
Target: 5'- uGAGucAGAAGCGucGGGCGAcGGCa -3' miRNA: 3'- gCUUgcUCUUCGCcuUCCGCUuCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 973 | 0.67 | 0.665572 |
Target: 5'- gCGGucGCGcuucucGGCGGGAgucuGGCGggGGCGa -3' miRNA: 3'- -GCU--UGCucu---UCGCCUU----CCGCuuCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 32152 | 0.67 | 0.643118 |
Target: 5'- uGAACGAgGAAGCcGAccgGGGCGGacGGGUa -3' miRNA: 3'- gCUUGCU-CUUCGcCU---UCCGCU--UCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 22555 | 0.67 | 0.631869 |
Target: 5'- gGGACGGcucGCGGAAGGUGAucGGUa -3' miRNA: 3'- gCUUGCUcuuCGCCUUCCGCUu-CCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 15902 | 0.68 | 0.609383 |
Target: 5'- uGAAgGGGAacaucaagGGCGcGAAgGGCGAcaaGGGCGa -3' miRNA: 3'- gCUUgCUCU--------UCGC-CUU-CCGCU---UCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 25637 | 0.68 | 0.598165 |
Target: 5'- cCGGACGGGcAGCGcuGGGCGccguauGGCGu -3' miRNA: 3'- -GCUUGCUCuUCGCcuUCCGCuu----CCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 21615 | 0.69 | 0.520983 |
Target: 5'- gGGGCuguuGGggGCGGAgacGGGCGcucAGGCGu -3' miRNA: 3'- gCUUGc---UCuuCGCCU---UCCGCu--UCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 23486 | 0.69 | 0.542712 |
Target: 5'- cCGAAgcucuuCGAuGAGCGGAAGGCagcGGCGa -3' miRNA: 3'- -GCUU------GCUcUUCGCCUUCCGcuuCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 19244 | 0.69 | 0.520983 |
Target: 5'- gGGGCGGGAacaugaAGCGGGucacucucGGCGgcGGCa -3' miRNA: 3'- gCUUGCUCU------UCGCCUu-------CCGCuuCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 35831 | 0.69 | 0.531807 |
Target: 5'- uCGAACcggcGGGAGUGGucgagcuGGGCGAcGGCGu -3' miRNA: 3'- -GCUUGc---UCUUCGCCu------UCCGCUuCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 27938 | 0.69 | 0.553689 |
Target: 5'- uCGAACGGGGcguuGUGGAucAGGaacCGggGGCa -3' miRNA: 3'- -GCUUGCUCUu---CGCCU--UCC---GCuuCCGc -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 37537 | 0.71 | 0.399464 |
Target: 5'- uCGAGCGGGGGcGCaccugGGAAGcccGCGAAGGUGg -3' miRNA: 3'- -GCUUGCUCUU-CG-----CCUUC---CGCUUCCGC- -5' |
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8186 | 3' | -54.1 | NC_001978.2 | + | 4074 | 0.71 | 0.398528 |
Target: 5'- uGGGCGAGAAGUaccGGGugccgcugaaccuGGGCGAAgucGGCGa -3' miRNA: 3'- gCUUGCUCUUCG---CCU-------------UCCGCUU---CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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