miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8186 3' -54.1 NC_001978.2 + 21194 1.1 0.000854
Target:  5'- gCGAACGAGAAGCGGAAGGCGAAGGCGg -3'
miRNA:   3'- -GCUUGCUCUUCGCCUUCCGCUUCCGC- -5'
8186 3' -54.1 NC_001978.2 + 8630 0.73 0.313107
Target:  5'- uGAACcuGAAGgGGAAGGCGAAGcCGg -3'
miRNA:   3'- gCUUGcuCUUCgCCUUCCGCUUCcGC- -5'
8186 3' -54.1 NC_001978.2 + 37841 0.73 0.313107
Target:  5'- cCGGACGuGggGCGaagugccccuuGucGGCGggGGCGc -3'
miRNA:   3'- -GCUUGCuCuuCGC-----------CuuCCGCuuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 4655 0.73 0.321072
Target:  5'- cCGu-CGAGcacGCGGAAGGUGAAGGaCGa -3'
miRNA:   3'- -GCuuGCUCuu-CGCCUUCCGCUUCC-GC- -5'
8186 3' -54.1 NC_001978.2 + 24454 0.73 0.321072
Target:  5'- cCGGGCGccacuGAGCGGAAGGacuGggGGCGc -3'
miRNA:   3'- -GCUUGCuc---UUCGCCUUCCg--CuuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 17436 0.73 0.345869
Target:  5'- aCGAACG-GcAGCGcuGAGGGCGAcGGCGu -3'
miRNA:   3'- -GCUUGCuCuUCGC--CUUCCGCUuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 4074 0.71 0.398528
Target:  5'- uGGGCGAGAAGUaccGGGugccgcugaaccuGGGCGAAgucGGCGa -3'
miRNA:   3'- gCUUGCUCUUCG---CCU-------------UCCGCUU---CCGC- -5'
8186 3' -54.1 NC_001978.2 + 37537 0.71 0.399464
Target:  5'- uCGAGCGGGGGcGCaccugGGAAGcccGCGAAGGUGg -3'
miRNA:   3'- -GCUUGCUCUU-CG-----CCUUC---CGCUUCCGC- -5'
8186 3' -54.1 NC_001978.2 + 19244 0.69 0.520983
Target:  5'- gGGGCGGGAacaugaAGCGGGucacucucGGCGgcGGCa -3'
miRNA:   3'- gCUUGCUCU------UCGCCUu-------CCGCuuCCGc -5'
8186 3' -54.1 NC_001978.2 + 21615 0.69 0.520983
Target:  5'- gGGGCuguuGGggGCGGAgacGGGCGcucAGGCGu -3'
miRNA:   3'- gCUUGc---UCuuCGCCU---UCCGCu--UCCGC- -5'
8186 3' -54.1 NC_001978.2 + 35831 0.69 0.531807
Target:  5'- uCGAACcggcGGGAGUGGucgagcuGGGCGAcGGCGu -3'
miRNA:   3'- -GCUUGc---UCUUCGCCu------UCCGCUuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 23486 0.69 0.542712
Target:  5'- cCGAAgcucuuCGAuGAGCGGAAGGCagcGGCGa -3'
miRNA:   3'- -GCUU------GCUcUUCGCCUUCCGcuuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 27938 0.69 0.553689
Target:  5'- uCGAACGGGGcguuGUGGAucAGGaacCGggGGCa -3'
miRNA:   3'- -GCUUGCUCUu---CGCCU--UCC---GCuuCCGc -5'
8186 3' -54.1 NC_001978.2 + 25637 0.68 0.598165
Target:  5'- cCGGACGGGcAGCGcuGGGCGccguauGGCGu -3'
miRNA:   3'- -GCUUGCUCuUCGCcuUCCGCuu----CCGC- -5'
8186 3' -54.1 NC_001978.2 + 15902 0.68 0.609383
Target:  5'- uGAAgGGGAacaucaagGGCGcGAAgGGCGAcaaGGGCGa -3'
miRNA:   3'- gCUUgCUCU--------UCGC-CUU-CCGCU---UCCGC- -5'
8186 3' -54.1 NC_001978.2 + 22555 0.67 0.631869
Target:  5'- gGGACGGcucGCGGAAGGUGAucGGUa -3'
miRNA:   3'- gCUUGCUcuuCGCCUUCCGCUu-CCGc -5'
8186 3' -54.1 NC_001978.2 + 32152 0.67 0.643118
Target:  5'- uGAACGAgGAAGCcGAccgGGGCGGacGGGUa -3'
miRNA:   3'- gCUUGCU-CUUCGcCU---UCCGCU--UCCGc -5'
8186 3' -54.1 NC_001978.2 + 4178 0.67 0.654356
Target:  5'- cCGGACGAagagccGGAGcCGGAAGGCaagccggacgacGAAGGgGc -3'
miRNA:   3'- -GCUUGCU------CUUC-GCCUUCCG------------CUUCCgC- -5'
8186 3' -54.1 NC_001978.2 + 973 0.67 0.665572
Target:  5'- gCGGucGCGcuucucGGCGGGAgucuGGCGggGGCGa -3'
miRNA:   3'- -GCU--UGCucu---UCGCCUU----CCGCuuCCGC- -5'
8186 3' -54.1 NC_001978.2 + 24767 0.67 0.665572
Target:  5'- uGAGucAGAAGCGucGGGCGAcGGCa -3'
miRNA:   3'- gCUUgcUCUUCGCcuUCCGCUuCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.