miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 3' -53.2 NC_001978.2 + 367 0.67 0.720933
Target:  5'- -cGCGCCGACCuGUugUCGCucAUcgaAGCCg -3'
miRNA:   3'- caUGCGGCUGGcCA--AGCGcuUG---UUGG- -5'
8199 3' -53.2 NC_001978.2 + 1583 0.69 0.575831
Target:  5'- ---aGCCGACCGGggCGaCGcuCAGCg -3'
miRNA:   3'- caugCGGCUGGCCaaGC-GCuuGUUGg -5'
8199 3' -53.2 NC_001978.2 + 2450 0.71 0.478619
Target:  5'- -aGCGCCGugUGuagcucUUCGCGGACGuccGCCa -3'
miRNA:   3'- caUGCGGCugGCc-----AAGCGCUUGU---UGG- -5'
8199 3' -53.2 NC_001978.2 + 3105 0.67 0.742517
Target:  5'- ---aGCCgGACCGa--CGCGAACAcuGCCg -3'
miRNA:   3'- caugCGG-CUGGCcaaGCGCUUGU--UGG- -5'
8199 3' -53.2 NC_001978.2 + 3248 0.66 0.753141
Target:  5'- cGUGCGCUGGCaGGgUC-CGAACAucguugGCCu -3'
miRNA:   3'- -CAUGCGGCUGgCCaAGcGCUUGU------UGG- -5'
8199 3' -53.2 NC_001978.2 + 3914 0.74 0.354435
Target:  5'- -gACgGCCGACCgcuucaGGUUCGUGAAguuCAACCu -3'
miRNA:   3'- caUG-CGGCUGG------CCAAGCGCUU---GUUGG- -5'
8199 3' -53.2 NC_001978.2 + 4321 0.66 0.753141
Target:  5'- gGUACGCguACCGGUUCaaCGAacugagucACGACCu -3'
miRNA:   3'- -CAUGCGgcUGGCCAAGc-GCU--------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 4782 0.69 0.620621
Target:  5'- --cCGCCGACUGaagagCGCGAuuccCAGCCg -3'
miRNA:   3'- cauGCGGCUGGCcaa--GCGCUu---GUUGG- -5'
8199 3' -53.2 NC_001978.2 + 4907 0.67 0.698981
Target:  5'- -aGCGCCaACUuugaGGcgCGCGAGCGugCg -3'
miRNA:   3'- caUGCGGcUGG----CCaaGCGCUUGUugG- -5'
8199 3' -53.2 NC_001978.2 + 5138 0.67 0.725282
Target:  5'- --cCGCCGACCacgacgacgacgccGUUCuucguGCGGGCAACCu -3'
miRNA:   3'- cauGCGGCUGGc-------------CAAG-----CGCUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 5379 0.67 0.698981
Target:  5'- -gGCGaCCG-CCGGgauugUCGgCGAgACGGCCg -3'
miRNA:   3'- caUGC-GGCuGGCCa----AGC-GCU-UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 5869 0.72 0.408899
Target:  5'- -gGCGCCGA-CGGUaagaGCGGACuGCCa -3'
miRNA:   3'- caUGCGGCUgGCCAag--CGCUUGuUGG- -5'
8199 3' -53.2 NC_001978.2 + 6734 0.67 0.709997
Target:  5'- -gACGCCGGgcaauCCGGUcgaCGCuGAGCGcGCCg -3'
miRNA:   3'- caUGCGGCU-----GGCCAa--GCG-CUUGU-UGG- -5'
8199 3' -53.2 NC_001978.2 + 6798 0.69 0.575831
Target:  5'- -aGCGUCGACCGGauugcccggcgUCGUGAcaACGGCg -3'
miRNA:   3'- caUGCGGCUGGCCa----------AGCGCU--UGUUGg -5'
8199 3' -53.2 NC_001978.2 + 7198 0.77 0.235314
Target:  5'- -gACGCCGgaGCCGGUUCGCuucuGACGGCg -3'
miRNA:   3'- caUGCGGC--UGGCCAAGCGc---UUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 9645 0.72 0.428179
Target:  5'- -aGgGCgGACCGG-UCGCGAAgGACg -3'
miRNA:   3'- caUgCGgCUGGCCaAGCGCUUgUUGg -5'
8199 3' -53.2 NC_001978.2 + 11004 0.76 0.241018
Target:  5'- -aACGCCGACCcGUUCGCGAuuggGCGcgaagucGCCu -3'
miRNA:   3'- caUGCGGCUGGcCAAGCGCU----UGU-------UGG- -5'
8199 3' -53.2 NC_001978.2 + 11515 0.69 0.586978
Target:  5'- -gGCGCCGACCGc-UUGCGuGCccguGCCa -3'
miRNA:   3'- caUGCGGCUGGCcaAGCGCuUGu---UGG- -5'
8199 3' -53.2 NC_001978.2 + 12320 0.7 0.531807
Target:  5'- gGUACGCCuGCCGcUUCGcCGAcggucccgacACGGCCg -3'
miRNA:   3'- -CAUGCGGcUGGCcAAGC-GCU----------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 12570 0.66 0.762592
Target:  5'- ---aGCCGACCGGgaaCGCcGACGagacggcagcacuGCCg -3'
miRNA:   3'- caugCGGCUGGCCaa-GCGcUUGU-------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.