miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 3' -53.2 NC_001978.2 + 22108 0.69 0.60826
Target:  5'- aGUACGUCGGCCGuGUgCGCGcugaucuGACGcCCu -3'
miRNA:   3'- -CAUGCGGCUGGC-CAaGCGC-------UUGUuGG- -5'
8199 3' -53.2 NC_001978.2 + 31414 0.71 0.478619
Target:  5'- -aGCGCCGcaacCCGGgaCGCGAaaGCGugCa -3'
miRNA:   3'- caUGCGGCu---GGCCaaGCGCU--UGUugG- -5'
8199 3' -53.2 NC_001978.2 + 22286 0.7 0.520983
Target:  5'- -gACGCCgGACCGGUcCGgGAA--GCCu -3'
miRNA:   3'- caUGCGG-CUGGCCAaGCgCUUguUGG- -5'
8199 3' -53.2 NC_001978.2 + 12320 0.7 0.531807
Target:  5'- gGUACGCCuGCCGcUUCGcCGAcggucccgacACGGCCg -3'
miRNA:   3'- -CAUGCGGcUGGCcAAGC-GCU----------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 27053 0.7 0.564732
Target:  5'- cGUGCGCUacuucgcGCCGGaagagCGCGAcuACGACCu -3'
miRNA:   3'- -CAUGCGGc------UGGCCaa---GCGCU--UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 1583 0.69 0.575831
Target:  5'- ---aGCCGACCGGggCGaCGcuCAGCg -3'
miRNA:   3'- caugCGGCUGGCCaaGC-GCuuGUUGg -5'
8199 3' -53.2 NC_001978.2 + 32162 0.69 0.575831
Target:  5'- ---aGCCGACCGGg--GCGGACGGgUa -3'
miRNA:   3'- caugCGGCUGGCCaagCGCUUGUUgG- -5'
8199 3' -53.2 NC_001978.2 + 13344 0.69 0.575831
Target:  5'- --uCGCCGAUUGGUaCGCGcuguGCAACg -3'
miRNA:   3'- cauGCGGCUGGCCAaGCGCu---UGUUGg -5'
8199 3' -53.2 NC_001978.2 + 34670 0.69 0.598165
Target:  5'- -cAC-CCGGCaCGGUUCG-GAguGCGACCg -3'
miRNA:   3'- caUGcGGCUG-GCCAAGCgCU--UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 30372 0.71 0.468291
Target:  5'- -cGCGCCGAagccgcCCGGcUCGCGuGGCAggguGCCg -3'
miRNA:   3'- caUGCGGCU------GGCCaAGCGC-UUGU----UGG- -5'
8199 3' -53.2 NC_001978.2 + 29974 0.71 0.464192
Target:  5'- --uUGCCGACCGGcuugccgcugagCGCGAagugaucgaaGCGACCg -3'
miRNA:   3'- cauGCGGCUGGCCaa----------GCGCU----------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 27137 0.71 0.458078
Target:  5'- gGUGCGCgGugCGGUcgagugguaUGCGAAUGGCCu -3'
miRNA:   3'- -CAUGCGgCugGCCAa--------GCGCUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 25416 0.79 0.164963
Target:  5'- --cCGCCGACCGGUUCGgGcuCGACg -3'
miRNA:   3'- cauGCGGCUGGCCAAGCgCuuGUUGg -5'
8199 3' -53.2 NC_001978.2 + 7198 0.77 0.235314
Target:  5'- -gACGCCGgaGCCGGUUCGCuucuGACGGCg -3'
miRNA:   3'- caUGCGGC--UGGCCAAGCGc---UUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 11004 0.76 0.241018
Target:  5'- -aACGCCGACCcGUUCGCGAuuggGCGcgaagucGCCu -3'
miRNA:   3'- caUGCGGCUGGcCAAGCGCU----UGU-------UGG- -5'
8199 3' -53.2 NC_001978.2 + 22053 0.76 0.248145
Target:  5'- -cGCGCCGACCuGGgcaGCGAagcgcACGACCu -3'
miRNA:   3'- caUGCGGCUGG-CCaagCGCU-----UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 33284 0.75 0.305293
Target:  5'- -aGCGCgCGACCGGUcacaagcucgaUUGUGGGCAGCg -3'
miRNA:   3'- caUGCG-GCUGGCCA-----------AGCGCUUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 3914 0.74 0.354435
Target:  5'- -gACgGCCGACCgcuucaGGUUCGUGAAguuCAACCu -3'
miRNA:   3'- caUG-CGGCUGG------CCAAGCGCUU---GUUGG- -5'
8199 3' -53.2 NC_001978.2 + 9645 0.72 0.428179
Target:  5'- -aGgGCgGACCGG-UCGCGAAgGACg -3'
miRNA:   3'- caUgCGgCUGGCCaAGCGCUUgUUGg -5'
8199 3' -53.2 NC_001978.2 + 18758 0.72 0.446984
Target:  5'- aGUGCGCCGAauccuucagcacgUCGGgcagaccgUUCGCGAuauCGACCc -3'
miRNA:   3'- -CAUGCGGCU-------------GGCC--------AAGCGCUu--GUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.