Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8199 | 5' | -50.2 | NC_001978.2 | + | 28653 | 1.1 | 0.002189 |
Target: 5'- aCGGGCGUAUUCACCCGAACAUCAACAc -3' miRNA: 3'- -GCCCGCAUAAGUGGGCUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 26810 | 0.77 | 0.336719 |
Target: 5'- aGGGCGUcgUCuucgugaugcGCCCGAACAcguccgUCAGCGu -3' miRNA: 3'- gCCCGCAuaAG----------UGGGCUUGU------AGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 25487 | 0.73 | 0.548851 |
Target: 5'- uGGGCGacgUCgaGCCCGAACcgGUCGGCGg -3' miRNA: 3'- gCCCGCauaAG--UGGGCUUG--UAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 18333 | 0.72 | 0.560207 |
Target: 5'- uGGGCGaagGcUCACCCGAAgGUCGuCAc -3' miRNA: 3'- gCCCGCa--UaAGUGGGCUUgUAGUuGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 10085 | 0.72 | 0.59462 |
Target: 5'- gGGGCGU--UCAgUCGAcCAUCAACGc -3' miRNA: 3'- gCCCGCAuaAGUgGGCUuGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 30497 | 0.71 | 0.629349 |
Target: 5'- -cGGCGagAUUCGCCCGAAgGUCGGuCGg -3' miRNA: 3'- gcCCGCa-UAAGUGGGCUUgUAGUU-GU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 32324 | 0.71 | 0.629349 |
Target: 5'- uGGGCGUcgUgACCCGG---UCGACGu -3' miRNA: 3'- gCCCGCAuaAgUGGGCUuguAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 1914 | 0.71 | 0.629349 |
Target: 5'- aCGGGCGgcacuGCCC-AGCGUCAGCGc -3' miRNA: 3'- -GCCCGCauaagUGGGcUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 32728 | 0.71 | 0.652534 |
Target: 5'- -cGGCGgcUUCcCCCaGGGCGUCAGCGu -3' miRNA: 3'- gcCCGCauAAGuGGG-CUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 39104 | 0.7 | 0.675634 |
Target: 5'- cCGGGCaGUcaagccgccAUUCACCCGGGCAgCAucACGg -3' miRNA: 3'- -GCCCG-CA---------UAAGUGGGCUUGUaGU--UGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 15726 | 0.7 | 0.687122 |
Target: 5'- uGGGCGUAcgugUCGCCguCGAGCccCAGCGa -3' miRNA: 3'- gCCCGCAUa---AGUGG--GCUUGuaGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 6099 | 0.69 | 0.75436 |
Target: 5'- gCGGGaGUGaccgUCAgaaccuucgcgcCCCGGGCGUCGACAa -3' miRNA: 3'- -GCCCgCAUa---AGU------------GGGCUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 7962 | 0.69 | 0.76516 |
Target: 5'- gCGGGCGUcacgccgUCGCCCGG--GUCgAGCAc -3' miRNA: 3'- -GCCCGCAua-----AGUGGGCUugUAG-UUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 13615 | 0.69 | 0.775808 |
Target: 5'- cCGGGCGUGUacuucagCACCCGGuUAcCGACc -3' miRNA: 3'- -GCCCGCAUAa------GUGGGCUuGUaGUUGu -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 16179 | 0.68 | 0.786291 |
Target: 5'- aCGGGaa---UCGCCCcGACGUCGGCAg -3' miRNA: 3'- -GCCCgcauaAGUGGGcUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 36881 | 0.68 | 0.79455 |
Target: 5'- uGGGCGUucggcagacgCGCCgGAACGUCGucgucgGCAg -3' miRNA: 3'- gCCCGCAuaa-------GUGGgCUUGUAGU------UGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 10213 | 0.68 | 0.796597 |
Target: 5'- uCGGGCGUuca-GgCCGGAC-UCAACGc -3' miRNA: 3'- -GCCCGCAuaagUgGGCUUGuAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 35840 | 0.68 | 0.826319 |
Target: 5'- uGGGCGccgaccUUCccuuGCCCGA-CGUCGGCAu -3' miRNA: 3'- gCCCGCau----AAG----UGGGCUuGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 13333 | 0.67 | 0.84502 |
Target: 5'- -cGGCGUAauagcugugcCACCCGGACGcguUCAGCGu -3' miRNA: 3'- gcCCGCAUaa--------GUGGGCUUGU---AGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 7831 | 0.67 | 0.84502 |
Target: 5'- aCGGGCGag-UCuCCCGaAGCggCGACGg -3' miRNA: 3'- -GCCCGCauaAGuGGGC-UUGuaGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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