Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8199 | 5' | -50.2 | NC_001978.2 | + | 516 | 0.67 | 0.862729 |
Target: 5'- aGcGCGUAUgCGCCUGGGCAUCGu-- -3' miRNA: 3'- gCcCGCAUAaGUGGGCUUGUAGUugu -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 1914 | 0.71 | 0.629349 |
Target: 5'- aCGGGCGgcacuGCCC-AGCGUCAGCGc -3' miRNA: 3'- -GCCCGCauaagUGGGcUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 6099 | 0.69 | 0.75436 |
Target: 5'- gCGGGaGUGaccgUCAgaaccuucgcgcCCCGGGCGUCGACAa -3' miRNA: 3'- -GCCCgCAUa---AGU------------GGGCUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 7831 | 0.67 | 0.84502 |
Target: 5'- aCGGGCGag-UCuCCCGaAGCggCGACGg -3' miRNA: 3'- -GCCCGCauaAGuGGGC-UUGuaGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 7962 | 0.69 | 0.76516 |
Target: 5'- gCGGGCGUcacgccgUCGCCCGG--GUCgAGCAc -3' miRNA: 3'- -GCCCGCAua-----AGUGGGCUugUAG-UUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 10085 | 0.72 | 0.59462 |
Target: 5'- gGGGCGU--UCAgUCGAcCAUCAACGc -3' miRNA: 3'- gCCCGCAuaAGUgGGCUuGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 10213 | 0.68 | 0.796597 |
Target: 5'- uCGGGCGUuca-GgCCGGAC-UCAACGc -3' miRNA: 3'- -GCCCGCAuaagUgGGCUUGuAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 13333 | 0.67 | 0.84502 |
Target: 5'- -cGGCGUAauagcugugcCACCCGGACGcguUCAGCGu -3' miRNA: 3'- gcCCGCAUaa--------GUGGGCUUGU---AGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 13552 | 0.67 | 0.871188 |
Target: 5'- cCGGGUgcugaaGUAcaCGCCCGGuucgGCGUCGACu -3' miRNA: 3'- -GCCCG------CAUaaGUGGGCU----UGUAGUUGu -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 13615 | 0.69 | 0.775808 |
Target: 5'- cCGGGCGUGUacuucagCACCCGGuUAcCGACc -3' miRNA: 3'- -GCCCGCAUAa------GUGGGCUuGUaGUUGu -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 13917 | 0.66 | 0.879371 |
Target: 5'- uGGGCuugaaggCGCCCGGAUacaggGUCAGCGu -3' miRNA: 3'- gCCCGcauaa--GUGGGCUUG-----UAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 15647 | 0.66 | 0.894883 |
Target: 5'- -cGGCGgcUUCGCUgGGGC-UCGACGg -3' miRNA: 3'- gcCCGCauAAGUGGgCUUGuAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 15726 | 0.7 | 0.687122 |
Target: 5'- uGGGCGUAcgugUCGCCguCGAGCccCAGCGa -3' miRNA: 3'- gCCCGCAUa---AGUGG--GCUUGuaGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 16179 | 0.68 | 0.786291 |
Target: 5'- aCGGGaa---UCGCCCcGACGUCGGCAg -3' miRNA: 3'- -GCCCgcauaAGUGGGcUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 16345 | 0.67 | 0.84502 |
Target: 5'- aGuGGCGag--CGCCCcAACGUCGGCAg -3' miRNA: 3'- gC-CCGCauaaGUGGGcUUGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 18333 | 0.72 | 0.560207 |
Target: 5'- uGGGCGaagGcUCACCCGAAgGUCGuCAc -3' miRNA: 3'- gCCCGCa--UaAGUGGGCUUgUAGUuGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 19996 | 0.66 | 0.91194 |
Target: 5'- gCGGGUGcggcacaucggaagGUUgCGCCCGuucuCAUCAACGg -3' miRNA: 3'- -GCCCGCa-------------UAA-GUGGGCuu--GUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 23096 | 0.66 | 0.897846 |
Target: 5'- gGGGCGUugUUGCCCGcuucacuugugcugaAggACGUCGGCAa -3' miRNA: 3'- gCCCGCAuaAGUGGGC---------------U--UGUAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 25487 | 0.73 | 0.548851 |
Target: 5'- uGGGCGacgUCgaGCCCGAACcgGUCGGCGg -3' miRNA: 3'- gCCCGCauaAG--UGGGCUUG--UAGUUGU- -5' |
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8199 | 5' | -50.2 | NC_001978.2 | + | 25585 | 0.66 | 0.909218 |
Target: 5'- gGGGCGUG---ACCUGAGCggCAAg- -3' miRNA: 3'- gCCCGCAUaagUGGGCUUGuaGUUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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