miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
82 5' -48.1 AC_000005.1 + 8362 0.66 0.909634
Target:  5'- aGCGGgGGaagcgGUAUGUCGGCcuGACg-- -3'
miRNA:   3'- -CGCCgCCa----CAUACGGUUGuuUUGaau -5'
82 5' -48.1 AC_000005.1 + 15254 0.66 0.916635
Target:  5'- aUGGCGGUGguugGUcuacGCCGGCGAcGCa-- -3'
miRNA:   3'- cGCCGCCACa---UA----CGGUUGUUuUGaau -5'
82 5' -48.1 AC_000005.1 + 18225 0.68 0.842167
Target:  5'- gGCGGCGGUGauaGUGUCGcUAAGAUa-- -3'
miRNA:   3'- -CGCCGCCACa--UACGGUuGUUUUGaau -5'
82 5' -48.1 AC_000005.1 + 18231 1.1 0.002202
Target:  5'- cGCGGCGGUGUAUGCCAACAAAACUUAu -3'
miRNA:   3'- -CGCCGCCACAUACGGUUGUUUUGAAU- -5'
82 5' -48.1 AC_000005.1 + 32946 0.7 0.757783
Target:  5'- aUGGCGGUGgagggcGCCcuuACAGAGCUUu -3'
miRNA:   3'- cGCCGCCACaua---CGGu--UGUUUUGAAu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.