miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8200 3' -55.1 NC_001978.2 + 19401 0.66 0.671259
Target:  5'- -aGCGCUCCGau---GCCCgGUUGCCg -3'
miRNA:   3'- acUGUGGGGUggauuCGGGgCAAUGG- -5'
8200 3' -55.1 NC_001978.2 + 24390 0.66 0.671259
Target:  5'- cGACGCUgCGCCU--GCCCUGggcgACg -3'
miRNA:   3'- aCUGUGGgGUGGAuuCGGGGCaa--UGg -5'
8200 3' -55.1 NC_001978.2 + 29854 0.66 0.670143
Target:  5'- aGugACCCCGgucacucCCU--GCCCgGgUUGCCg -3'
miRNA:   3'- aCugUGGGGU-------GGAuuCGGGgC-AAUGG- -5'
8200 3' -55.1 NC_001978.2 + 28180 0.66 0.660081
Target:  5'- cGAUACCCgcccaGCCgguuucuuucgUGAGCCCCaGcgACCg -3'
miRNA:   3'- aCUGUGGGg----UGG-----------AUUCGGGG-CaaUGG- -5'
8200 3' -55.1 NC_001978.2 + 38262 0.66 0.660081
Target:  5'- cGGCaACCCuCAgCggauGCCCCGggGCUu -3'
miRNA:   3'- aCUG-UGGG-GUgGauu-CGGGGCaaUGG- -5'
8200 3' -55.1 NC_001978.2 + 28212 0.66 0.660081
Target:  5'- uUGACGCCgaacacgcgCGCCUGAGCaUCCG--GCCg -3'
miRNA:   3'- -ACUGUGGg--------GUGGAUUCG-GGGCaaUGG- -5'
8200 3' -55.1 NC_001978.2 + 36669 0.66 0.653361
Target:  5'- cUGAgCGCCCCugagccggucgcggaACCUGAGCCgguaCCGgcggaGCCu -3'
miRNA:   3'- -ACU-GUGGGG---------------UGGAUUCGG----GGCaa---UGG- -5'
8200 3' -55.1 NC_001978.2 + 6159 0.66 0.637656
Target:  5'- gGGCGCCCaaccuacuCACgugaguacgCUGAGCgCCCGUUcACCu -3'
miRNA:   3'- aCUGUGGG--------GUG---------GAUUCG-GGGCAA-UGG- -5'
8200 3' -55.1 NC_001978.2 + 4052 0.66 0.62643
Target:  5'- aUGACGCCCCugCccgacggauUGGGCgagaaguaCCGggUGCCg -3'
miRNA:   3'- -ACUGUGGGGugG---------AUUCGg-------GGCa-AUGG- -5'
8200 3' -55.1 NC_001978.2 + 351 0.66 0.615209
Target:  5'- aGGCGCCCaUACCggcuuGCCacaCGUUccGCCa -3'
miRNA:   3'- aCUGUGGG-GUGGauu--CGGg--GCAA--UGG- -5'
8200 3' -55.1 NC_001978.2 + 9553 0.67 0.604004
Target:  5'- cGcCACCCUgaagACCcugagacagAAGCCCCaUUGCCg -3'
miRNA:   3'- aCuGUGGGG----UGGa--------UUCGGGGcAAUGG- -5'
8200 3' -55.1 NC_001978.2 + 12860 0.67 0.602885
Target:  5'- cGACGCCCCAuagguguUCUGAGUCgggcgCGUaaUGCCg -3'
miRNA:   3'- aCUGUGGGGU-------GGAUUCGGg----GCA--AUGG- -5'
8200 3' -55.1 NC_001978.2 + 36742 0.68 0.552925
Target:  5'- cGGCGCCCCAggccguucaggacguCCUuccgGAGCCgacgCCGgaGCCu -3'
miRNA:   3'- aCUGUGGGGU---------------GGA----UUCGG----GGCaaUGG- -5'
8200 3' -55.1 NC_001978.2 + 507 0.68 0.548537
Target:  5'- -cACGCCUgaagcgcguaugCGCCUGGGCaUCGUUGCCg -3'
miRNA:   3'- acUGUGGG------------GUGGAUUCGgGGCAAUGG- -5'
8200 3' -55.1 NC_001978.2 + 17623 0.68 0.548537
Target:  5'- cUGACAagCCCG-CUGAGCCguCCGgaGCCg -3'
miRNA:   3'- -ACUGUg-GGGUgGAUUCGG--GGCaaUGG- -5'
8200 3' -55.1 NC_001978.2 + 32853 0.68 0.537616
Target:  5'- cGACACCgaCACCUGAGCUUcagCGUUGu- -3'
miRNA:   3'- aCUGUGGg-GUGGAUUCGGG---GCAAUgg -5'
8200 3' -55.1 NC_001978.2 + 15707 0.68 0.537616
Target:  5'- cGA-GCCCCAgCgAAGCCgCCGgaACCg -3'
miRNA:   3'- aCUgUGGGGUgGaUUCGG-GGCaaUGG- -5'
8200 3' -55.1 NC_001978.2 + 41079 0.68 0.537616
Target:  5'- gGACACCCC-CCUAuccgucgacaCCCCccUACCu -3'
miRNA:   3'- aCUGUGGGGuGGAUuc--------GGGGcaAUGG- -5'
8200 3' -55.1 NC_001978.2 + 17411 0.68 0.534355
Target:  5'- aGcCGCCCCcguugccgaagaacACCUGAGCgCCGaccGCCg -3'
miRNA:   3'- aCuGUGGGG--------------UGGAUUCGgGGCaa-UGG- -5'
8200 3' -55.1 NC_001978.2 + 38216 0.68 0.494761
Target:  5'- cGACGCCCC-UCUAuGgCCCG-UACUg -3'
miRNA:   3'- aCUGUGGGGuGGAUuCgGGGCaAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.