miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 5' -52.1 NC_001978.2 + 8793 0.7 0.594697
Target:  5'- gCUGAGCGCaGAGaca-CGAAGCGcGCCg -3'
miRNA:   3'- -GACUCGCGcUUCacuaGCUUCGC-UGG- -5'
8202 5' -52.1 NC_001978.2 + 20012 0.7 0.604922
Target:  5'- gCUGuGCGCcGGGUGcUCGAAGgucgugcCGACCg -3'
miRNA:   3'- -GACuCGCGcUUCACuAGCUUC-------GCUGG- -5'
8202 5' -52.1 NC_001978.2 + 38520 0.69 0.628848
Target:  5'- --cAGCGCGAAGUcGAgcgCGAcGGgGGCCg -3'
miRNA:   3'- gacUCGCGCUUCA-CUa--GCU-UCgCUGG- -5'
8202 5' -52.1 NC_001978.2 + 10757 0.69 0.650509
Target:  5'- -aGGGCGCuaucaacGgcGUGAUCGAucuucugaacugGGCGACUc -3'
miRNA:   3'- gaCUCGCG-------CuuCACUAGCU------------UCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 21642 0.69 0.651648
Target:  5'- gCUGAGUGaUGAAGUGA-CGcuGUGACUc -3'
miRNA:   3'- -GACUCGC-GCUUCACUaGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 34419 0.68 0.685673
Target:  5'- -aGuGUGCGAAGUGGUCGgcGUcacaACCc -3'
miRNA:   3'- gaCuCGCGCUUCACUAGCuuCGc---UGG- -5'
8202 5' -52.1 NC_001978.2 + 3077 0.69 0.663025
Target:  5'- cCUGaAGCGCGucaug--CGGAGUGACCg -3'
miRNA:   3'- -GAC-UCGCGCuucacuaGCUUCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 19598 0.69 0.640252
Target:  5'- -cGGGCGUGAuGUGGUCG--GCG-CCg -3'
miRNA:   3'- gaCUCGCGCUuCACUAGCuuCGCuGG- -5'
8202 5' -52.1 NC_001978.2 + 33250 0.71 0.516615
Target:  5'- --cGGCGUGAAgGUGGUCGAGcaccCGACCg -3'
miRNA:   3'- gacUCGCGCUU-CACUAGCUUc---GCUGG- -5'
8202 5' -52.1 NC_001978.2 + 28465 0.72 0.484378
Target:  5'- cCUGGGCGcCGGAGuUGA-CGGAGuCGACa -3'
miRNA:   3'- -GACUCGC-GCUUC-ACUaGCUUC-GCUGg -5'
8202 5' -52.1 NC_001978.2 + 35825 0.72 0.484378
Target:  5'- --cGGCG-GGAGUGGUCGAgcugGGCGACg -3'
miRNA:   3'- gacUCGCgCUUCACUAGCU----UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 37861 0.67 0.762552
Target:  5'- cCUGGGCGCcaugcuGGGUGAcccauUCGA-GCGGCa -3'
miRNA:   3'- -GACUCGCGc-----UUCACU-----AGCUuCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 22936 0.66 0.822073
Target:  5'- aUGAGCGCGA-------GAAGCGACg -3'
miRNA:   3'- gACUCGCGCUucacuagCUUCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 8583 0.66 0.822073
Target:  5'- --cGGCGCGAaccggccuuguucAGgGAUCGA-GCGGCUg -3'
miRNA:   3'- gacUCGCGCU-------------UCaCUAGCUuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 26603 0.66 0.823024
Target:  5'- cCUGGGCGUucGGgucguacucGAUCGGcAGCGACa -3'
miRNA:   3'- -GACUCGCGcuUCa--------CUAGCU-UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 28962 0.66 0.832415
Target:  5'- gCUGAGcCGUGuacauGUGAauaucgaagUCGGAGCcGCCg -3'
miRNA:   3'- -GACUC-GCGCuu---CACU---------AGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 31303 0.66 0.841581
Target:  5'- -cGAcGCGCuGAGUGGUgaCGguGUGGCCg -3'
miRNA:   3'- gaCU-CGCGcUUCACUA--GCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 26545 0.66 0.841581
Target:  5'- gUGcGCGCGGAGcuUGcccGUaCGAGGuCGACCa -3'
miRNA:   3'- gACuCGCGCUUC--AC---UA-GCUUC-GCUGG- -5'
8202 5' -52.1 NC_001978.2 + 18713 0.66 0.841581
Target:  5'- aUGAGCGgGucGau-UCGGAGCGcuGCCg -3'
miRNA:   3'- gACUCGCgCuuCacuAGCUUCGC--UGG- -5'
8202 5' -52.1 NC_001978.2 + 41031 0.77 0.262988
Target:  5'- gCUGGGCGCGGcAGcGcuaGAAGCGACCg -3'
miRNA:   3'- -GACUCGCGCU-UCaCuagCUUCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.