miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 5' -52.1 NC_001978.2 + 36542 0.66 0.823024
Target:  5'- gCUGAGCGUGucGgcucaugacugGGUCGgcGUGGCa -3'
miRNA:   3'- -GACUCGCGCuuCa----------CUAGCuuCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 15077 0.68 0.719203
Target:  5'- -gGAGCuGCGgcGUGAgaaUCGugagcuucGCGACCa -3'
miRNA:   3'- gaCUCG-CGCuuCACU---AGCuu------CGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 1359 0.68 0.719203
Target:  5'- -cGGGuCGCGAAGUgGAUCGAAGaguuuugcuaccUGACg -3'
miRNA:   3'- gaCUC-GCGCUUCA-CUAGCUUC------------GCUGg -5'
8202 5' -52.1 NC_001978.2 + 21268 0.67 0.751898
Target:  5'- cCUGAGCGCGcuGGUuacGGcCGAcgaagacgAGUGACCg -3'
miRNA:   3'- -GACUCGCGCu-UCA---CUaGCU--------UCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 3550 0.67 0.773062
Target:  5'- -cGGGCGCu--GUGGUUGAGGU-ACCg -3'
miRNA:   3'- gaCUCGCGcuuCACUAGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 24546 0.66 0.793601
Target:  5'- gUGAGUaGCGAAGUGuucaaugcguUCGucGGCGGCg -3'
miRNA:   3'- gACUCG-CGCUUCACu---------AGCu-UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 35571 0.66 0.803605
Target:  5'- -cGAGC-CGGAGacggcgccccUGAgcgUCGgcGCGACCg -3'
miRNA:   3'- gaCUCGcGCUUC----------ACU---AGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 25650 0.66 0.813417
Target:  5'- gCUGGGCGCcguauGgcGUGuucCGggGUGACg -3'
miRNA:   3'- -GACUCGCG-----CuuCACua-GCuuCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 30299 0.66 0.813417
Target:  5'- -cGAGgGCGAcGUGuaCGAAGCcGCCc -3'
miRNA:   3'- gaCUCgCGCUuCACuaGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 21642 0.69 0.651648
Target:  5'- gCUGAGUGaUGAAGUGA-CGcuGUGACUc -3'
miRNA:   3'- -GACUCGC-GCUUCACUaGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 10757 0.69 0.650509
Target:  5'- -aGGGCGCuaucaacGgcGUGAUCGAucuucugaacugGGCGACUc -3'
miRNA:   3'- gaCUCGCG-------CuuCACUAGCU------------UCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 38520 0.69 0.628848
Target:  5'- --cAGCGCGAAGUcGAgcgCGAcGGgGGCCg -3'
miRNA:   3'- gacUCGCGCUUCA-CUa--GCU-UCgCUGG- -5'
8202 5' -52.1 NC_001978.2 + 3670 0.73 0.423023
Target:  5'- -aGGGUGCGAAGUuuUCGAAgGUGGCUa -3'
miRNA:   3'- gaCUCGCGCUUCAcuAGCUU-CGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 19201 0.72 0.473846
Target:  5'- -gGAGCGUGGgcuagGGUGAgCGAAGC-ACCa -3'
miRNA:   3'- gaCUCGCGCU-----UCACUaGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 15917 0.72 0.495021
Target:  5'- -aGGGCGCGAAG-GG-CGAcaagGGCGACa -3'
miRNA:   3'- gaCUCGCGCUUCaCUaGCU----UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 4903 0.71 0.526455
Target:  5'- uCUGAGCGCcaacuuuGAGGcGcgCGAGcguGCGACCg -3'
miRNA:   3'- -GACUCGCG-------CUUCaCuaGCUU---CGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 28992 0.71 0.527553
Target:  5'- -cGGGgGCGGAGUcgccacGAUugcccgacagacCGGAGCGACCg -3'
miRNA:   3'- gaCUCgCGCUUCA------CUA------------GCUUCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 36100 0.7 0.572082
Target:  5'- cCUGGGCGCGcGAG-GAagcCGAAGCcgacGACCa -3'
miRNA:   3'- -GACUCGCGC-UUCaCUa--GCUUCG----CUGG- -5'
8202 5' -52.1 NC_001978.2 + 8793 0.7 0.594697
Target:  5'- gCUGAGCGCaGAGaca-CGAAGCGcGCCg -3'
miRNA:   3'- -GACUCGCGcUUCacuaGCUUCGC-UGG- -5'
8202 5' -52.1 NC_001978.2 + 20012 0.7 0.604922
Target:  5'- gCUGuGCGCcGGGUGcUCGAAGgucgugcCGACCg -3'
miRNA:   3'- -GACuCGCGcUUCACuAGCUUC-------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.