miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 5' -52.1 NC_001978.2 + 1359 0.68 0.719203
Target:  5'- -cGGGuCGCGAAGUgGAUCGAAGaguuuugcuaccUGACg -3'
miRNA:   3'- gaCUC-GCGCUUCA-CUAGCUUC------------GCUGg -5'
8202 5' -52.1 NC_001978.2 + 3077 0.69 0.663025
Target:  5'- cCUGaAGCGCGucaug--CGGAGUGACCg -3'
miRNA:   3'- -GAC-UCGCGCuucacuaGCUUCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 3550 0.67 0.773062
Target:  5'- -cGGGCGCu--GUGGUUGAGGU-ACCg -3'
miRNA:   3'- gaCUCGCGcuuCACUAGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 3670 0.73 0.423023
Target:  5'- -aGGGUGCGAAGUuuUCGAAgGUGGCUa -3'
miRNA:   3'- gaCUCGCGCUUCAcuAGCUU-CGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 4903 0.71 0.526455
Target:  5'- uCUGAGCGCcaacuuuGAGGcGcgCGAGcguGCGACCg -3'
miRNA:   3'- -GACUCGCG-------CUUCaCuaGCUU---CGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 6633 0.66 0.841581
Target:  5'- uUGGGCGCGAcGGUaGA-CGA--CGACCu -3'
miRNA:   3'- gACUCGCGCU-UCA-CUaGCUucGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 8583 0.66 0.822073
Target:  5'- --cGGCGCGAaccggccuuguucAGgGAUCGA-GCGGCUg -3'
miRNA:   3'- gacUCGCGCU-------------UCaCUAGCUuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 8793 0.7 0.594697
Target:  5'- gCUGAGCGCaGAGaca-CGAAGCGcGCCg -3'
miRNA:   3'- -GACUCGCGcUUCacuaGCUUCGC-UGG- -5'
8202 5' -52.1 NC_001978.2 + 10757 0.69 0.650509
Target:  5'- -aGGGCGCuaucaacGgcGUGAUCGAucuucugaacugGGCGACUc -3'
miRNA:   3'- gaCUCGCG-------CuuCACUAGCU------------UCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 15077 0.68 0.719203
Target:  5'- -gGAGCuGCGgcGUGAgaaUCGugagcuucGCGACCa -3'
miRNA:   3'- gaCUCG-CGCuuCACU---AGCuu------CGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 15917 0.72 0.495021
Target:  5'- -aGGGCGCGAAG-GG-CGAcaagGGCGACa -3'
miRNA:   3'- gaCUCGCGCUUCaCUaGCU----UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 16412 0.66 0.832415
Target:  5'- gCUGGGCuuCGAAgcGUGGUCGGucuacccgGGCGGCg -3'
miRNA:   3'- -GACUCGc-GCUU--CACUAGCU--------UCGCUGg -5'
8202 5' -52.1 NC_001978.2 + 18713 0.66 0.841581
Target:  5'- aUGAGCGgGucGau-UCGGAGCGcuGCCg -3'
miRNA:   3'- gACUCGCgCuuCacuAGCUUCGC--UGG- -5'
8202 5' -52.1 NC_001978.2 + 19201 0.72 0.473846
Target:  5'- -gGAGCGUGGgcuagGGUGAgCGAAGC-ACCa -3'
miRNA:   3'- gaCUCGCGCU-----UCACUaGCUUCGcUGG- -5'
8202 5' -52.1 NC_001978.2 + 19470 0.66 0.841581
Target:  5'- -gGGGCGCacGAucGGUGA-CGccGUGACCg -3'
miRNA:   3'- gaCUCGCG--CU--UCACUaGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 19598 0.69 0.640252
Target:  5'- -cGGGCGUGAuGUGGUCG--GCG-CCg -3'
miRNA:   3'- gaCUCGCGCUuCACUAGCuuCGCuGG- -5'
8202 5' -52.1 NC_001978.2 + 20012 0.7 0.604922
Target:  5'- gCUGuGCGCcGGGUGcUCGAAGgucgugcCGACCg -3'
miRNA:   3'- -GACuCGCGcUUCACuAGCUUC-------GCUGG- -5'
8202 5' -52.1 NC_001978.2 + 21268 0.67 0.751898
Target:  5'- cCUGAGCGCGcuGGUuacGGcCGAcgaagacgAGUGACCg -3'
miRNA:   3'- -GACUCGCGCu-UCA---CUaGCU--------UCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 21642 0.69 0.651648
Target:  5'- gCUGAGUGaUGAAGUGA-CGcuGUGACUc -3'
miRNA:   3'- -GACUCGC-GCUUCACUaGCuuCGCUGG- -5'
8202 5' -52.1 NC_001978.2 + 22320 0.66 0.823024
Target:  5'- aUGGGCGacugGAAGacGUCGAAgGCGACg -3'
miRNA:   3'- gACUCGCg---CUUCacUAGCUU-CGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.