Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8202 | 5' | -52.1 | NC_001978.2 | + | 29991 | 1.13 | 0.000818 |
Target: 5'- gCUGAGCGCGAAGUGAUCGAAGCGACCg -3' miRNA: 3'- -GACUCGCGCUUCACUAGCUUCGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 41031 | 0.77 | 0.262988 |
Target: 5'- gCUGGGCGCGGcAGcGcuaGAAGCGACCg -3' miRNA: 3'- -GACUCGCGCU-UCaCuagCUUCGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 3670 | 0.73 | 0.423023 |
Target: 5'- -aGGGUGCGAAGUuuUCGAAgGUGGCUa -3' miRNA: 3'- gaCUCGCGCUUCAcuAGCUU-CGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 19201 | 0.72 | 0.473846 |
Target: 5'- -gGAGCGUGGgcuagGGUGAgCGAAGC-ACCa -3' miRNA: 3'- gaCUCGCGCU-----UCACUaGCUUCGcUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 28465 | 0.72 | 0.484378 |
Target: 5'- cCUGGGCGcCGGAGuUGA-CGGAGuCGACa -3' miRNA: 3'- -GACUCGC-GCUUC-ACUaGCUUC-GCUGg -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 35825 | 0.72 | 0.484378 |
Target: 5'- --cGGCG-GGAGUGGUCGAgcugGGCGACg -3' miRNA: 3'- gacUCGCgCUUCACUAGCU----UCGCUGg -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 15917 | 0.72 | 0.495021 |
Target: 5'- -aGGGCGCGAAG-GG-CGAcaagGGCGACa -3' miRNA: 3'- gaCUCGCGCUUCaCUaGCU----UCGCUGg -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 33250 | 0.71 | 0.516615 |
Target: 5'- --cGGCGUGAAgGUGGUCGAGcaccCGACCg -3' miRNA: 3'- gacUCGCGCUU-CACUAGCUUc---GCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 4903 | 0.71 | 0.526455 |
Target: 5'- uCUGAGCGCcaacuuuGAGGcGcgCGAGcguGCGACCg -3' miRNA: 3'- -GACUCGCG-------CUUCaCuaGCUU---CGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 28992 | 0.71 | 0.527553 |
Target: 5'- -cGGGgGCGGAGUcgccacGAUugcccgacagacCGGAGCGACCg -3' miRNA: 3'- gaCUCgCGCUUCA------CUA------------GCUUCGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 36100 | 0.7 | 0.572082 |
Target: 5'- cCUGGGCGCGcGAG-GAagcCGAAGCcgacGACCa -3' miRNA: 3'- -GACUCGCGC-UUCaCUa--GCUUCG----CUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 8793 | 0.7 | 0.594697 |
Target: 5'- gCUGAGCGCaGAGaca-CGAAGCGcGCCg -3' miRNA: 3'- -GACUCGCGcUUCacuaGCUUCGC-UGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 20012 | 0.7 | 0.604922 |
Target: 5'- gCUGuGCGCcGGGUGcUCGAAGgucgugcCGACCg -3' miRNA: 3'- -GACuCGCGcUUCACuAGCUUC-------GCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 38520 | 0.69 | 0.628848 |
Target: 5'- --cAGCGCGAAGUcGAgcgCGAcGGgGGCCg -3' miRNA: 3'- gacUCGCGCUUCA-CUa--GCU-UCgCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 19598 | 0.69 | 0.640252 |
Target: 5'- -cGGGCGUGAuGUGGUCG--GCG-CCg -3' miRNA: 3'- gaCUCGCGCUuCACUAGCuuCGCuGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 10757 | 0.69 | 0.650509 |
Target: 5'- -aGGGCGCuaucaacGgcGUGAUCGAucuucugaacugGGCGACUc -3' miRNA: 3'- gaCUCGCG-------CuuCACUAGCU------------UCGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 21642 | 0.69 | 0.651648 |
Target: 5'- gCUGAGUGaUGAAGUGA-CGcuGUGACUc -3' miRNA: 3'- -GACUCGC-GCUUCACUaGCuuCGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 3077 | 0.69 | 0.663025 |
Target: 5'- cCUGaAGCGCGucaug--CGGAGUGACCg -3' miRNA: 3'- -GAC-UCGCGCuucacuaGCUUCGCUGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 34419 | 0.68 | 0.685673 |
Target: 5'- -aGuGUGCGAAGUGGUCGgcGUcacaACCc -3' miRNA: 3'- gaCuCGCGCUUCACUAGCuuCGc---UGG- -5' |
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8202 | 5' | -52.1 | NC_001978.2 | + | 15077 | 0.68 | 0.719203 |
Target: 5'- -gGAGCuGCGgcGUGAgaaUCGugagcuucGCGACCa -3' miRNA: 3'- gaCUCG-CGCuuCACU---AGCuu------CGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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