Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8203 | 5' | -54.7 | NC_001978.2 | + | 17827 | 0.71 | 0.36569 |
Target: 5'- aAUUCGGCcccGGAccguccuuguacGCGuCGCCGAAGCCc -3' miRNA: 3'- cUGAGUCGuu-CCU------------UGC-GCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 260 | 0.71 | 0.36569 |
Target: 5'- cGAC-CGGCAAGGAcguauggcggaACGUGUgGcAAGCCg -3' miRNA: 3'- -CUGaGUCGUUCCU-----------UGCGCGgC-UUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19688 | 0.71 | 0.36569 |
Target: 5'- cGCUgGGCAuGGAcUGgGCCGAAGCg -3' miRNA: 3'- cUGAgUCGUuCCUuGCgCGGCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 17838 | 0.71 | 0.374652 |
Target: 5'- uACUcCGGCAAGGAcgcugacgGCGUGCCGGgcgaagGGUCg -3' miRNA: 3'- cUGA-GUCGUUCCU--------UGCGCGGCU------UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 12078 | 0.71 | 0.383761 |
Target: 5'- --gUCGGCAAGcugaGACGCGCCauAGCCg -3' miRNA: 3'- cugAGUCGUUCc---UUGCGCGGcuUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 30511 | 0.7 | 0.401468 |
Target: 5'- cGugUCGGCAAgGGAAC-CGUCGGcguccgcguucucAGCCg -3' miRNA: 3'- -CugAGUCGUU-CCUUGcGCGGCU-------------UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 31450 | 0.7 | 0.402415 |
Target: 5'- cGCUgAGCuaccGGAGCcauGgGCCGAAGCCc -3' miRNA: 3'- cUGAgUCGuu--CCUUG---CgCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19014 | 0.7 | 0.402415 |
Target: 5'- uGACuaUCAGCAacacGGGAACGC-UCGAAGaCCu -3' miRNA: 3'- -CUG--AGUCGU----UCCUUGCGcGGCUUC-GG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32275 | 0.7 | 0.402415 |
Target: 5'- cGACgccCAGCGGacGGAcguucACGCGCCGugccuacuGAGCCg -3' miRNA: 3'- -CUGa--GUCGUU--CCU-----UGCGCGGC--------UUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 1655 | 0.7 | 0.411955 |
Target: 5'- cGACUCcgcgaAGCAaauGGuGAACGCGagcCCGAAGCUu -3' miRNA: 3'- -CUGAG-----UCGU---UC-CUUGCGC---GGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 35118 | 0.7 | 0.421634 |
Target: 5'- gGACggAGCAAGGAagccACGCGCgGGcAGCa -3' miRNA: 3'- -CUGagUCGUUCCU----UGCGCGgCU-UCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 39435 | 0.7 | 0.441395 |
Target: 5'- ---aCGGCAGGGGGCGCGgCaaGggGCUu -3' miRNA: 3'- cugaGUCGUUCCUUGCGCgG--CuuCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 38898 | 0.69 | 0.461671 |
Target: 5'- cGACuUCAGCGAaGAuucuuugugcgACGCGUCG-AGCCg -3' miRNA: 3'- -CUG-AGUCGUUcCU-----------UGCGCGGCuUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 28975 | 0.69 | 0.461671 |
Target: 5'- gGAUUCGGCAAGGucuACgGgGgCGGAGUCg -3' miRNA: 3'- -CUGAGUCGUUCCu--UG-CgCgGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 32959 | 0.69 | 0.461671 |
Target: 5'- -gUUCAGgGAGGAuuaCGCCGAAGCg -3' miRNA: 3'- cuGAGUCgUUCCUugcGCGGCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 19966 | 0.69 | 0.482427 |
Target: 5'- cGAUUCAGUAuuGGGGACcggcCGCUGAgcagaAGCCg -3' miRNA: 3'- -CUGAGUCGU--UCCUUGc---GCGGCU-----UCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 9093 | 0.68 | 0.503623 |
Target: 5'- cGACUcCGGCuGAGGcuaaGCGCCuggguGAAGCCg -3' miRNA: 3'- -CUGA-GUCG-UUCCuug-CGCGG-----CUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 20233 | 0.68 | 0.514373 |
Target: 5'- aGACgguugaGGCcgugAAGGAAgcCGCCGAAGCCg -3' miRNA: 3'- -CUGag----UCG----UUCCUUgcGCGGCUUCGG- -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 28914 | 0.68 | 0.525214 |
Target: 5'- cGGCUCAGCucaucAAGGGGCuugagGCGC-GAAGCg -3' miRNA: 3'- -CUGAGUCG-----UUCCUUG-----CGCGgCUUCGg -5' |
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8203 | 5' | -54.7 | NC_001978.2 | + | 36103 | 0.68 | 0.525214 |
Target: 5'- gGGCgc-GCGAGGAa---GCCGAAGCCg -3' miRNA: 3'- -CUGaguCGUUCCUugcgCGGCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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