miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 260 0.71 0.36569
Target:  5'- cGAC-CGGCAAGGAcguauggcggaACGUGUgGcAAGCCg -3'
miRNA:   3'- -CUGaGUCGUUCCU-----------UGCGCGgC-UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 1378 0.67 0.614364
Target:  5'- cGCgUCAGC-GGGAAUGUGCCGcgcaaucacgGGGUCg -3'
miRNA:   3'- cUG-AGUCGuUCCUUGCGCGGC----------UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 1655 0.7 0.411955
Target:  5'- cGACUCcgcgaAGCAaauGGuGAACGCGagcCCGAAGCUu -3'
miRNA:   3'- -CUGAG-----UCGU---UC-CUUGCGC---GGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 2559 0.66 0.625681
Target:  5'- aGAgUUAGUcGGGAACGCcucaaCCGGgaAGCCg -3'
miRNA:   3'- -CUgAGUCGuUCCUUGCGc----GGCU--UCGG- -5'
8203 5' -54.7 NC_001978.2 + 2623 0.66 0.669772
Target:  5'- uGGCUCAGuCGAccgucacGGcACGCGUCGuacacGGCCu -3'
miRNA:   3'- -CUGAGUC-GUU-------CCuUGCGCGGCu----UCGG- -5'
8203 5' -54.7 NC_001978.2 + 3116 0.66 0.670898
Target:  5'- cGGCUCGcGUAAGGAGauagUGaCGCCGGaauGGCUc -3'
miRNA:   3'- -CUGAGU-CGUUCCUU----GC-GCGGCU---UCGG- -5'
8203 5' -54.7 NC_001978.2 + 3212 0.66 0.637003
Target:  5'- -cCUCAGCuugcuucuucaGGGGAACGCGUUccuuGCCg -3'
miRNA:   3'- cuGAGUCG-----------UUCCUUGCGCGGcuu-CGG- -5'
8203 5' -54.7 NC_001978.2 + 3294 0.72 0.323137
Target:  5'- cGCaCGGCAAGGAACGCGUUccccugaaGAAGCa -3'
miRNA:   3'- cUGaGUCGUUCCUUGCGCGG--------CUUCGg -5'
8203 5' -54.7 NC_001978.2 + 4916 0.68 0.551569
Target:  5'- uACUUAGaaagcgcgcgaacaAGGGAACGCGCgucgaaaugaGAAGCCg -3'
miRNA:   3'- cUGAGUCg-------------UUCCUUGCGCGg---------CUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 5186 0.72 0.323137
Target:  5'- --gUCGGC--GGAACgcugaGCGCCGGAGCCc -3'
miRNA:   3'- cugAGUCGuuCCUUG-----CGCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 8227 0.73 0.262953
Target:  5'- aGGCUCAGCGGcucGCGUGCCGuauGCCg -3'
miRNA:   3'- -CUGAGUCGUUccuUGCGCGGCuu-CGG- -5'
8203 5' -54.7 NC_001978.2 + 9093 0.68 0.503623
Target:  5'- cGACUcCGGCuGAGGcuaaGCGCCuggguGAAGCCg -3'
miRNA:   3'- -CUGA-GUCG-UUCCuug-CGCGG-----CUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 9810 0.76 0.184938
Target:  5'- cGCUgGGCAAGGucgacGGCGCGgCGAAGUCg -3'
miRNA:   3'- cUGAgUCGUUCC-----UUGCGCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 11644 0.66 0.637003
Target:  5'- ----gGGCAGGGAcCgGCGCCGGacgacccgguaAGCCg -3'
miRNA:   3'- cugagUCGUUCCUuG-CGCGGCU-----------UCGG- -5'
8203 5' -54.7 NC_001978.2 + 12078 0.71 0.383761
Target:  5'- --gUCGGCAAGcugaGACGCGCCauAGCCg -3'
miRNA:   3'- cugAGUCGUUCc---UUGCGCGGcuUCGG- -5'
8203 5' -54.7 NC_001978.2 + 12215 0.73 0.277093
Target:  5'- ---cCAGCcgugcccccgauAAGGAcCGUGCCGGAGCCg -3'
miRNA:   3'- cugaGUCG------------UUCCUuGCGCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 13437 0.76 0.179871
Target:  5'- gGACUCAGUAcgaauugaAGGu-UGuCGCCGAAGCCa -3'
miRNA:   3'- -CUGAGUCGU--------UCCuuGC-GCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 13639 0.66 0.670898
Target:  5'- cGACUCAGCGGcaauGGcgacuCGCGCCuaugcggucGgcGCCg -3'
miRNA:   3'- -CUGAGUCGUU----CCuu---GCGCGG---------CuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 13790 0.74 0.242849
Target:  5'- --aUCAGUAAGGcauACGCcauagcgacgGCCGGAGCCg -3'
miRNA:   3'- cugAGUCGUUCCu--UGCG----------CGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 14487 0.67 0.614364
Target:  5'- -cUUCAGCAccguuaccGGGAAgGC-CCGAcGCCg -3'
miRNA:   3'- cuGAGUCGU--------UCCUUgCGcGGCUuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.