miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 32959 0.69 0.461671
Target:  5'- -gUUCAGgGAGGAuuaCGCCGAAGCg -3'
miRNA:   3'- cuGAGUCgUUCCUugcGCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 34261 0.71 0.356878
Target:  5'- --gUCGGC--GGAGCuuGCCGGAGCCa -3'
miRNA:   3'- cugAGUCGuuCCUUGcgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 260 0.71 0.36569
Target:  5'- cGAC-CGGCAAGGAcguauggcggaACGUGUgGcAAGCCg -3'
miRNA:   3'- -CUGaGUCGUUCCU-----------UGCGCGgC-UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 19688 0.71 0.36569
Target:  5'- cGCUgGGCAuGGAcUGgGCCGAAGCg -3'
miRNA:   3'- cUGAgUCGUuCCUuGCgCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 17838 0.71 0.374652
Target:  5'- uACUcCGGCAAGGAcgcugacgGCGUGCCGGgcgaagGGUCg -3'
miRNA:   3'- cUGA-GUCGUUCCU--------UGCGCGGCU------UCGG- -5'
8203 5' -54.7 NC_001978.2 + 19014 0.7 0.402415
Target:  5'- uGACuaUCAGCAacacGGGAACGC-UCGAAGaCCu -3'
miRNA:   3'- -CUG--AGUCGU----UCCUUGCGcGGCUUC-GG- -5'
8203 5' -54.7 NC_001978.2 + 32275 0.7 0.402415
Target:  5'- cGACgccCAGCGGacGGAcguucACGCGCCGugccuacuGAGCCg -3'
miRNA:   3'- -CUGa--GUCGUU--CCU-----UGCGCGGC--------UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 1655 0.7 0.411955
Target:  5'- cGACUCcgcgaAGCAaauGGuGAACGCGagcCCGAAGCUu -3'
miRNA:   3'- -CUGAG-----UCGU---UC-CUUGCGC---GGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 39435 0.7 0.441395
Target:  5'- ---aCGGCAGGGGGCGCGgCaaGggGCUu -3'
miRNA:   3'- cugaGUCGUUCCUUGCGCgG--CuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 39769 0.72 0.307181
Target:  5'- cGGCgaacgGGCGAaccuuguugcGGAGCGCGCCGAcGCCc -3'
miRNA:   3'- -CUGag---UCGUU----------CCUUGCGCGGCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 23508 0.72 0.307181
Target:  5'- aGGCagCGGCgAAGGAguacgACGCGCCGAAcCCg -3'
miRNA:   3'- -CUGa-GUCG-UUCCU-----UGCGCGGCUUcGG- -5'
8203 5' -54.7 NC_001978.2 + 32029 0.72 0.299431
Target:  5'- aGGCUgAGC-GGGGGCGCGUCGucGGCUu -3'
miRNA:   3'- -CUGAgUCGuUCCUUGCGCGGCu-UCGG- -5'
8203 5' -54.7 NC_001978.2 + 24899 0.81 0.078009
Target:  5'- cGCUgAGCAAGGGGgGCGCCGAcGCUg -3'
miRNA:   3'- cUGAgUCGUUCCUUgCGCGGCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 23657 0.77 0.143597
Target:  5'- cGCgUCGGCAAGGGugGCGCUGugcucGCCa -3'
miRNA:   3'- cUG-AGUCGUUCCUugCGCGGCuu---CGG- -5'
8203 5' -54.7 NC_001978.2 + 13437 0.76 0.179871
Target:  5'- gGACUCAGUAcgaauugaAGGu-UGuCGCCGAAGCCa -3'
miRNA:   3'- -CUGAGUCGU--------UCCuuGC-GCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 9810 0.76 0.184938
Target:  5'- cGCUgGGCAAGGucgacGGCGCGgCGAAGUCg -3'
miRNA:   3'- cUGAgUCGUUCC-----UUGCGCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 13790 0.74 0.242849
Target:  5'- --aUCAGUAAGGcauACGCcauagcgacgGCCGGAGCCg -3'
miRNA:   3'- cugAGUCGUUCCu--UGCG----------CGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 8227 0.73 0.262953
Target:  5'- aGGCUCAGCGGcucGCGUGCCGuauGCCg -3'
miRNA:   3'- -CUGAGUCGUUccuUGCGCGGCuu-CGG- -5'
8203 5' -54.7 NC_001978.2 + 30218 0.73 0.269949
Target:  5'- cGCUguGCGGGaaGAGCGCaacggcaacGCCGggGCCg -3'
miRNA:   3'- cUGAguCGUUC--CUUGCG---------CGGCuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 17891 0.72 0.299431
Target:  5'- -uCUCGGCAAGcuucccgcGAAgGCgaaGCCGAAGCCg -3'
miRNA:   3'- cuGAGUCGUUC--------CUUgCG---CGGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.