miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8205 5' -56.4 NC_001978.2 + 17309 0.68 0.473957
Target:  5'- uGCGCGGguAgUgCGcCGacuCCCCAGCCu -3'
miRNA:   3'- -CGUGUCguUgA-GCuGCgu-GGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 30916 0.68 0.473957
Target:  5'- gGCACGGUGACgggugCGACaugaaggcauguGCGCCCaGGUCg -3'
miRNA:   3'- -CGUGUCGUUGa----GCUG------------CGUGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 33791 0.68 0.463781
Target:  5'- uGCugGGC-GCUCGACGUcgaACCUgAGUUu -3'
miRNA:   3'- -CGugUCGuUGAGCUGCG---UGGGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 23967 0.68 0.463781
Target:  5'- aGCACAGCg---CGACGgGCuUCCGGCg -3'
miRNA:   3'- -CGUGUCGuugaGCUGCgUG-GGGUCGg -5'
8205 5' -56.4 NC_001978.2 + 239 0.68 0.453721
Target:  5'- -aGCGGCAGCgUUGGCGU-UCCCGGUCc -3'
miRNA:   3'- cgUGUCGUUG-AGCUGCGuGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 32120 0.68 0.453721
Target:  5'- uGCcCGGCuccgacGACUucacgaagccgaCGACGCGCCCCcgcucAGCCu -3'
miRNA:   3'- -CGuGUCG------UUGA------------GCUGCGUGGGG-----UCGG- -5'
8205 5' -56.4 NC_001978.2 + 25948 0.68 0.453721
Target:  5'- uGCcCGGCAagcccuucGCUCaGGCGCagcgugaagccgACUCCGGCCg -3'
miRNA:   3'- -CGuGUCGU--------UGAG-CUGCG------------UGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 11687 0.68 0.453721
Target:  5'- aGUACGGCAGCguugCGGCuCGCCCUu-CCa -3'
miRNA:   3'- -CGUGUCGUUGa---GCUGcGUGGGGucGG- -5'
8205 5' -56.4 NC_001978.2 + 26308 0.68 0.453721
Target:  5'- gGCGCGGCGcuuguGCUCGcCGguUgCCuGCCg -3'
miRNA:   3'- -CGUGUCGU-----UGAGCuGCguGgGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 41409 0.68 0.44378
Target:  5'- gGCGgGGCGGCUccgaaguuggCGGCGUguGCCCuCAGCg -3'
miRNA:   3'- -CGUgUCGUUGA----------GCUGCG--UGGG-GUCGg -5'
8205 5' -56.4 NC_001978.2 + 30697 0.68 0.44378
Target:  5'- aGCGcCGGUAcguGCUCGACGC-CCUU-GCCg -3'
miRNA:   3'- -CGU-GUCGU---UGAGCUGCGuGGGGuCGG- -5'
8205 5' -56.4 NC_001978.2 + 34243 0.68 0.433964
Target:  5'- aGUugGGCGcgcACUCGACgGCGCUCaguuGCCc -3'
miRNA:   3'- -CGugUCGU---UGAGCUG-CGUGGGgu--CGG- -5'
8205 5' -56.4 NC_001978.2 + 11518 0.68 0.433964
Target:  5'- -aGCGGCGccgaccGCUUG-CGUGCCCguGCCa -3'
miRNA:   3'- cgUGUCGU------UGAGCuGCGUGGGguCGG- -5'
8205 5' -56.4 NC_001978.2 + 18064 0.68 0.424274
Target:  5'- aGCACccuucAGCGACaaGGCGCuuGCCCaUGGCCg -3'
miRNA:   3'- -CGUG-----UCGUUGagCUGCG--UGGG-GUCGG- -5'
8205 5' -56.4 NC_001978.2 + 33105 0.68 0.424274
Target:  5'- cGCACgGGCGGCUUcGCGgGCUugcuuCCGGCCg -3'
miRNA:   3'- -CGUG-UCGUUGAGcUGCgUGG-----GGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 18930 0.69 0.414715
Target:  5'- aGCAUgguucgGGUGACUCGACccgGCACgCUgAGCCg -3'
miRNA:   3'- -CGUG------UCGUUGAGCUG---CGUG-GGgUCGG- -5'
8205 5' -56.4 NC_001978.2 + 12258 0.69 0.411873
Target:  5'- -aAUGGCAaccgucucuccGCUCGAccaugcccacgugcCGC-CCCCAGCCg -3'
miRNA:   3'- cgUGUCGU-----------UGAGCU--------------GCGuGGGGUCGG- -5'
8205 5' -56.4 NC_001978.2 + 35647 0.69 0.409043
Target:  5'- uGUACAGCGcccaGCUCGACcccgaagaccggucgGCACUCgaAGCCc -3'
miRNA:   3'- -CGUGUCGU----UGAGCUG---------------CGUGGGg-UCGG- -5'
8205 5' -56.4 NC_001978.2 + 21487 0.69 0.405289
Target:  5'- cGguCGGgGGCUCGACuccgccgacguGCACCCCGuGCg -3'
miRNA:   3'- -CguGUCgUUGAGCUG-----------CGUGGGGU-CGg -5'
8205 5' -56.4 NC_001978.2 + 15946 0.69 0.405289
Target:  5'- gGCGCgacgGGCGccgACUCGACGU-UCCCGGUCc -3'
miRNA:   3'- -CGUG----UCGU---UGAGCUGCGuGGGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.