miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8206 5' -55.2 NC_001978.2 + 39511 0.66 0.640881
Target:  5'- uGGCGcCGUCAUGacuucGAAGCGCGggGAAGa -3'
miRNA:   3'- -CUGCcGCAGUGU-----CUUCGCGCgaCUUC- -5'
8206 5' -55.2 NC_001978.2 + 29093 0.66 0.640881
Target:  5'- gGGCGuCGUCGCGuuggcagcguGAAGCGCGCggcacGggGc -3'
miRNA:   3'- -CUGCcGCAGUGU----------CUUCGCGCGa----CuuC- -5'
8206 5' -55.2 NC_001978.2 + 8106 0.66 0.634098
Target:  5'- cACGGCcuuguucaauuccuuGUCGCGGAGcGCGCGCa---- -3'
miRNA:   3'- cUGCCG---------------CAGUGUCUU-CGCGCGacuuc -5'
8206 5' -55.2 NC_001978.2 + 30643 0.66 0.618272
Target:  5'- cGGCGGaCGUUGCGgcgcuuGAAGaCGUGCUGAc- -3'
miRNA:   3'- -CUGCC-GCAGUGU------CUUC-GCGCGACUuc -5'
8206 5' -55.2 NC_001978.2 + 15413 0.66 0.618272
Target:  5'- -cCGGCGUCGuuGgcGCGCGCa---- -3'
miRNA:   3'- cuGCCGCAGUguCuuCGCGCGacuuc -5'
8206 5' -55.2 NC_001978.2 + 18597 0.66 0.618272
Target:  5'- cGGCaGCGUUACGGAuaucAGCGCgucgcauucGCUGAc- -3'
miRNA:   3'- -CUGcCGCAGUGUCU----UCGCG---------CGACUuc -5'
8206 5' -55.2 NC_001978.2 + 40215 0.66 0.616012
Target:  5'- aGCGGCGUagcgagaCACccgGGAAGCcuguuagGCGCUGAGa -3'
miRNA:   3'- cUGCCGCA-------GUG---UCUUCG-------CGCGACUUc -5'
8206 5' -55.2 NC_001978.2 + 19957 0.66 0.606981
Target:  5'- aACGGCGUUcCGG-AGCGCG-UGAAu -3'
miRNA:   3'- cUGCCGCAGuGUCuUCGCGCgACUUc -5'
8206 5' -55.2 NC_001978.2 + 22946 0.66 0.595713
Target:  5'- --gGGCGUCACGauGAGCGCGa-GAAGc -3'
miRNA:   3'- cugCCGCAGUGUc-UUCGCGCgaCUUC- -5'
8206 5' -55.2 NC_001978.2 + 19535 0.66 0.595713
Target:  5'- cACGGCGUCACcGAucGUGCGCc---- -3'
miRNA:   3'- cUGCCGCAGUGuCUu-CGCGCGacuuc -5'
8206 5' -55.2 NC_001978.2 + 16276 0.67 0.573284
Target:  5'- cACGGCGUU-CGGGucGGCaaGCUGggGg -3'
miRNA:   3'- cUGCCGCAGuGUCU--UCGcgCGACuuC- -5'
8206 5' -55.2 NC_001978.2 + 17420 0.67 0.540044
Target:  5'- cGGCGGCaaCACGaacacGAacGGCaGCGCUGAGGg -3'
miRNA:   3'- -CUGCCGcaGUGU-----CU--UCG-CGCGACUUC- -5'
8206 5' -55.2 NC_001978.2 + 24575 0.67 0.53347
Target:  5'- cGGCGGCGUCAUGGucggcauaugugucGGCGUGCUu--- -3'
miRNA:   3'- -CUGCCGCAGUGUCu-------------UCGCGCGAcuuc -5'
8206 5' -55.2 NC_001978.2 + 25561 0.67 0.529104
Target:  5'- cGACGGCGUgACccguggcgcccAGggGCGUGacCUGAGc -3'
miRNA:   3'- -CUGCCGCAgUG-----------UCuuCGCGC--GACUUc -5'
8206 5' -55.2 NC_001978.2 + 26055 0.69 0.465429
Target:  5'- uGACGGCGUCguGCAGu--CG-GCUGggGa -3'
miRNA:   3'- -CUGCCGCAG--UGUCuucGCgCGACuuC- -5'
8206 5' -55.2 NC_001978.2 + 36416 0.69 0.465429
Target:  5'- uGCGGCGuUCAUcauGgcGCugaGCGCUGAAGg -3'
miRNA:   3'- cUGCCGC-AGUGu--CuuCG---CGCGACUUC- -5'
8206 5' -55.2 NC_001978.2 + 33774 0.69 0.435111
Target:  5'- --aGGCGUUcCGcGAAGCGUGCUGGGc -3'
miRNA:   3'- cugCCGCAGuGU-CUUCGCGCGACUUc -5'
8206 5' -55.2 NC_001978.2 + 20471 0.7 0.405967
Target:  5'- gGACGGCGUCAagcucuucucuCAG-GGCGUcgaccugggGCUGAAGc -3'
miRNA:   3'- -CUGCCGCAGU-----------GUCuUCGCG---------CGACUUC- -5'
8206 5' -55.2 NC_001978.2 + 22054 0.71 0.351512
Target:  5'- aAUGGCGccuUCGCGGucGCGCGCUGc-- -3'
miRNA:   3'- cUGCCGC---AGUGUCuuCGCGCGACuuc -5'
8206 5' -55.2 NC_001978.2 + 744 0.72 0.310243
Target:  5'- --aGGCG-Cu--GAAGCGCGCUGAGGc -3'
miRNA:   3'- cugCCGCaGuguCUUCGCGCGACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.