miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8207 5' -55.6 NC_001978.2 + 18892 0.66 0.669922
Target:  5'- cCGCaGCGUCGAUagcggggaACGCCGcGCGCa-- -3'
miRNA:   3'- -GCGaUGCAGCUGg-------UGCGGC-UGUGacu -5'
8207 5' -55.6 NC_001978.2 + 19292 0.66 0.669922
Target:  5'- -aCUAC-UCGACCACGCcCGACgGCUu- -3'
miRNA:   3'- gcGAUGcAGCUGGUGCG-GCUG-UGAcu -5'
8207 5' -55.6 NC_001978.2 + 16719 0.66 0.668818
Target:  5'- cCGCUgcccauuGCGUCGACCGUGCUucagccugGGCGCUa- -3'
miRNA:   3'- -GCGA-------UGCAGCUGGUGCGG--------CUGUGAcu -5'
8207 5' -55.6 NC_001978.2 + 30739 0.66 0.658874
Target:  5'- cCGUgucgACGUCGACCGaaggggaaguUGCCGACGa--- -3'
miRNA:   3'- -GCGa---UGCAGCUGGU----------GCGGCUGUgacu -5'
8207 5' -55.6 NC_001978.2 + 5126 0.66 0.658874
Target:  5'- gCGCUcaGCGUuccgcCGACCACGacgaCGACGCc-- -3'
miRNA:   3'- -GCGA--UGCA-----GCUGGUGCg---GCUGUGacu -5'
8207 5' -55.6 NC_001978.2 + 15002 0.66 0.658874
Target:  5'- gCGCcaUACGUUGcCCGUGCCGguacgcacGCGCUGAu -3'
miRNA:   3'- -GCG--AUGCAGCuGGUGCGGC--------UGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 15558 0.66 0.658874
Target:  5'- uGUUGCGgaaGGCUuCaCCGGCACUGAg -3'
miRNA:   3'- gCGAUGCag-CUGGuGcGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 36072 0.66 0.658874
Target:  5'- uGCUACacgGGCCAcucaccCGCCGACACcUGGg -3'
miRNA:   3'- gCGAUGcagCUGGU------GCGGCUGUG-ACU- -5'
8207 5' -55.6 NC_001978.2 + 7622 0.66 0.647801
Target:  5'- aCGUcGCGucgaacUCGACCACGCUGcccGCACggGAa -3'
miRNA:   3'- -GCGaUGC------AGCUGGUGCGGC---UGUGa-CU- -5'
8207 5' -55.6 NC_001978.2 + 9403 0.66 0.614536
Target:  5'- aCGCUuCGUCGgcguucuucGCCAUGCCGGuuUUGAg -3'
miRNA:   3'- -GCGAuGCAGC---------UGGUGCGGCUguGACU- -5'
8207 5' -55.6 NC_001978.2 + 22104 0.66 0.614536
Target:  5'- gGUgagUACGUCGGCCgugugcGCGCUGAU-CUGAc -3'
miRNA:   3'- gCG---AUGCAGCUGG------UGCGGCUGuGACU- -5'
8207 5' -55.6 NC_001978.2 + 30179 0.67 0.592421
Target:  5'- gCGCUACGUguacgCGACCguugACGgC-ACACUGAa -3'
miRNA:   3'- -GCGAUGCA-----GCUGG----UGCgGcUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 1803 0.67 0.591318
Target:  5'- uCGCUcgaugaguacGCGUucagcaagcacagCGACCuauucgacGCGCUGACGCUGGg -3'
miRNA:   3'- -GCGA----------UGCA-------------GCUGG--------UGCGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 9149 0.67 0.570441
Target:  5'- gGUUACGgCGAauCCGuCGCCGACGCg-- -3'
miRNA:   3'- gCGAUGCaGCU--GGU-GCGGCUGUGacu -5'
8207 5' -55.6 NC_001978.2 + 39787 0.67 0.559523
Target:  5'- uGUUGCG--GAgCGCGCCGACGCccUGAa -3'
miRNA:   3'- gCGAUGCagCUgGUGCGGCUGUG--ACU- -5'
8207 5' -55.6 NC_001978.2 + 16151 0.67 0.548665
Target:  5'- aGUUGCGUcCGGCguUGCC-ACGCUGGg -3'
miRNA:   3'- gCGAUGCA-GCUGguGCGGcUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 18090 0.68 0.537874
Target:  5'- aGCgcaaGCG-CGGuuacuCCgGCGCCGACGCUGAc -3'
miRNA:   3'- gCGa---UGCaGCU-----GG-UGCGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 13824 0.68 0.537874
Target:  5'- cCGCaccCGU-GGCCAUuCCGACGCUGAc -3'
miRNA:   3'- -GCGau-GCAgCUGGUGcGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 21406 0.68 0.537874
Target:  5'- uCGCcgACGgcaaGACgCACGCCG-UACUGAa -3'
miRNA:   3'- -GCGa-UGCag--CUG-GUGCGGCuGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 37382 0.68 0.536798
Target:  5'- aGCaacgGCGcCGACCaucgauaGCGCCGcugagGCACUGAc -3'
miRNA:   3'- gCGa---UGCaGCUGG-------UGCGGC-----UGUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.