Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 18892 | 0.66 | 0.669922 |
Target: 5'- cCGCaGCGUCGAUagcggggaACGCCGcGCGCa-- -3' miRNA: 3'- -GCGaUGCAGCUGg-------UGCGGC-UGUGacu -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 19292 | 0.66 | 0.669922 |
Target: 5'- -aCUAC-UCGACCACGCcCGACgGCUu- -3' miRNA: 3'- gcGAUGcAGCUGGUGCG-GCUG-UGAcu -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 16719 | 0.66 | 0.668818 |
Target: 5'- cCGCUgcccauuGCGUCGACCGUGCUucagccugGGCGCUa- -3' miRNA: 3'- -GCGA-------UGCAGCUGGUGCGG--------CUGUGAcu -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 5126 | 0.66 | 0.658874 |
Target: 5'- gCGCUcaGCGUuccgcCGACCACGacgaCGACGCc-- -3' miRNA: 3'- -GCGA--UGCA-----GCUGGUGCg---GCUGUGacu -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 36072 | 0.66 | 0.658874 |
Target: 5'- uGCUACacgGGCCAcucaccCGCCGACACcUGGg -3' miRNA: 3'- gCGAUGcagCUGGU------GCGGCUGUG-ACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 15558 | 0.66 | 0.658874 |
Target: 5'- uGUUGCGgaaGGCUuCaCCGGCACUGAg -3' miRNA: 3'- gCGAUGCag-CUGGuGcGGCUGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 30739 | 0.66 | 0.658874 |
Target: 5'- cCGUgucgACGUCGACCGaaggggaaguUGCCGACGa--- -3' miRNA: 3'- -GCGa---UGCAGCUGGU----------GCGGCUGUgacu -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 15002 | 0.66 | 0.658874 |
Target: 5'- gCGCcaUACGUUGcCCGUGCCGguacgcacGCGCUGAu -3' miRNA: 3'- -GCG--AUGCAGCuGGUGCGGC--------UGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 7622 | 0.66 | 0.647801 |
Target: 5'- aCGUcGCGucgaacUCGACCACGCUGcccGCACggGAa -3' miRNA: 3'- -GCGaUGC------AGCUGGUGCGGC---UGUGa-CU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 22104 | 0.66 | 0.614536 |
Target: 5'- gGUgagUACGUCGGCCgugugcGCGCUGAU-CUGAc -3' miRNA: 3'- gCG---AUGCAGCUGG------UGCGGCUGuGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 9403 | 0.66 | 0.614536 |
Target: 5'- aCGCUuCGUCGgcguucuucGCCAUGCCGGuuUUGAg -3' miRNA: 3'- -GCGAuGCAGC---------UGGUGCGGCUguGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 30179 | 0.67 | 0.592421 |
Target: 5'- gCGCUACGUguacgCGACCguugACGgC-ACACUGAa -3' miRNA: 3'- -GCGAUGCA-----GCUGG----UGCgGcUGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 1803 | 0.67 | 0.591318 |
Target: 5'- uCGCUcgaugaguacGCGUucagcaagcacagCGACCuauucgacGCGCUGACGCUGGg -3' miRNA: 3'- -GCGA----------UGCA-------------GCUGG--------UGCGGCUGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 9149 | 0.67 | 0.570441 |
Target: 5'- gGUUACGgCGAauCCGuCGCCGACGCg-- -3' miRNA: 3'- gCGAUGCaGCU--GGU-GCGGCUGUGacu -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 39787 | 0.67 | 0.559523 |
Target: 5'- uGUUGCG--GAgCGCGCCGACGCccUGAa -3' miRNA: 3'- gCGAUGCagCUgGUGCGGCUGUG--ACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 16151 | 0.67 | 0.548665 |
Target: 5'- aGUUGCGUcCGGCguUGCC-ACGCUGGg -3' miRNA: 3'- gCGAUGCA-GCUGguGCGGcUGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 13824 | 0.68 | 0.537874 |
Target: 5'- cCGCaccCGU-GGCCAUuCCGACGCUGAc -3' miRNA: 3'- -GCGau-GCAgCUGGUGcGGCUGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 18090 | 0.68 | 0.537874 |
Target: 5'- aGCgcaaGCG-CGGuuacuCCgGCGCCGACGCUGAc -3' miRNA: 3'- gCGa---UGCaGCU-----GG-UGCGGCUGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 21406 | 0.68 | 0.537874 |
Target: 5'- uCGCcgACGgcaaGACgCACGCCG-UACUGAa -3' miRNA: 3'- -GCGa-UGCag--CUG-GUGCGGCuGUGACU- -5' |
|||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 37382 | 0.68 | 0.536798 |
Target: 5'- aGCaacgGCGcCGACCaucgauaGCGCCGcugagGCACUGAc -3' miRNA: 3'- gCGa---UGCaGCUGG-------UGCGGC-----UGUGACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home