Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 18892 | 0.66 | 0.669922 |
Target: 5'- cCGCaGCGUCGAUagcggggaACGCCGcGCGCa-- -3' miRNA: 3'- -GCGaUGCAGCUGg-------UGCGGC-UGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 30765 | 0.68 | 0.516519 |
Target: 5'- gGCaaggGCGUCGAgCACGuaCCGGCGCUc- -3' miRNA: 3'- gCGa---UGCAGCUgGUGC--GGCUGUGAcu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 40260 | 0.69 | 0.485156 |
Target: 5'- cCGCUACGUCuuCCGUGCCGuC-CUGGg -3' miRNA: 3'- -GCGAUGCAGcuGGUGCGGCuGuGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 20470 | 0.69 | 0.485156 |
Target: 5'- gGCgACGUCGGCCGa-CCGGCGCg-- -3' miRNA: 3'- gCGaUGCAGCUGGUgcGGCUGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 9403 | 0.66 | 0.614536 |
Target: 5'- aCGCUuCGUCGgcguucuucGCCAUGCCGGuuUUGAg -3' miRNA: 3'- -GCGAuGCAGC---------UGGUGCGGCUguGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 8775 | 0.69 | 0.474903 |
Target: 5'- gCGC-ACGUcCGACCACGUCaacccccugaaGugACUGAc -3' miRNA: 3'- -GCGaUGCA-GCUGGUGCGG-----------CugUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 26528 | 0.69 | 0.43503 |
Target: 5'- cCGUacgAgGUCGACCACGCCGuuCGCg-- -3' miRNA: 3'- -GCGa--UgCAGCUGGUGCGGCu-GUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 6804 | 0.7 | 0.415833 |
Target: 5'- gCGCUcaGCGUCGACCggauugcccgGCGUCGugACa-- -3' miRNA: 3'- -GCGA--UGCAGCUGG----------UGCGGCugUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 7622 | 0.66 | 0.647801 |
Target: 5'- aCGUcGCGucgaacUCGACCACGCUGcccGCACggGAa -3' miRNA: 3'- -GCGaUGC------AGCUGGUGCGGC---UGUGa-CU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15002 | 0.66 | 0.658874 |
Target: 5'- gCGCcaUACGUUGcCCGUGCCGguacgcacGCGCUGAu -3' miRNA: 3'- -GCG--AUGCAGCuGGUGCGGC--------UGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 30411 | 0.68 | 0.527156 |
Target: 5'- uCGCUcgacaaggucACGUCGGCUgagaACGCgGACGCcGAc -3' miRNA: 3'- -GCGA----------UGCAGCUGG----UGCGgCUGUGaCU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 29384 | 0.69 | 0.46476 |
Target: 5'- gCGUgccCGUCGu---CGCCGACGCUGAc -3' miRNA: 3'- -GCGau-GCAGCugguGCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 3061 | 0.69 | 0.45473 |
Target: 5'- gGCUucUGUCGgagacgauuGCCACGCUGcCGCUGAg -3' miRNA: 3'- gCGAu-GCAGC---------UGGUGCGGCuGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 32253 | 0.69 | 0.444819 |
Target: 5'- gCGCUcaACGUCGACCGgGUcaCGACGCc-- -3' miRNA: 3'- -GCGA--UGCAGCUGGUgCG--GCUGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15460 | 0.69 | 0.43503 |
Target: 5'- aCGCUGaacaacucCGUCGACCuuGCCGACGu--- -3' miRNA: 3'- -GCGAU--------GCAGCUGGugCGGCUGUgacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 31018 | 0.7 | 0.415833 |
Target: 5'- gCGCUAUGUCGcuGCCGugaaGCUGACcgguGCUGAg -3' miRNA: 3'- -GCGAUGCAGC--UGGUg---CGGCUG----UGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 13568 | 0.7 | 0.406431 |
Target: 5'- aCGCccgguucgGCGUCGACUccguucGCGCUGACGCaUGGu -3' miRNA: 3'- -GCGa-------UGCAGCUGG------UGCGGCUGUG-ACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 19356 | 0.72 | 0.320112 |
Target: 5'- gCGCUACGUccCGACgGaCGCCGACG-UGAc -3' miRNA: 3'- -GCGAUGCA--GCUGgU-GCGGCUGUgACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 33134 | 0.72 | 0.304586 |
Target: 5'- gGCaaGCGUUGGCaCGuugcCGCCGACGCUGAg -3' miRNA: 3'- gCGa-UGCAGCUG-GU----GCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 28044 | 0.75 | 0.206333 |
Target: 5'- -uCUACGUCGACC-CGUCGGCGCcgGAc -3' miRNA: 3'- gcGAUGCAGCUGGuGCGGCUGUGa-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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