Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 21406 | 0.68 | 0.537874 |
Target: 5'- uCGCcgACGgcaaGACgCACGCCG-UACUGAa -3' miRNA: 3'- -GCGa-UGCag--CUG-GUGCGGCuGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 20470 | 0.69 | 0.485156 |
Target: 5'- gGCgACGUCGGCCGa-CCGGCGCg-- -3' miRNA: 3'- gCGaUGCAGCUGGUgcGGCUGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 19356 | 0.72 | 0.320112 |
Target: 5'- gCGCUACGUccCGACgGaCGCCGACG-UGAc -3' miRNA: 3'- -GCGAUGCA--GCUGgU-GCGGCUGUgACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 19292 | 0.66 | 0.669922 |
Target: 5'- -aCUAC-UCGACCACGCcCGACgGCUu- -3' miRNA: 3'- gcGAUGcAGCUGGUGCG-GCUG-UGAcu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 18892 | 0.66 | 0.669922 |
Target: 5'- cCGCaGCGUCGAUagcggggaACGCCGcGCGCa-- -3' miRNA: 3'- -GCGaUGCAGCUGg-------UGCGGC-UGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 18090 | 0.68 | 0.537874 |
Target: 5'- aGCgcaaGCG-CGGuuacuCCgGCGCCGACGCUGAc -3' miRNA: 3'- gCGa---UGCaGCU-----GG-UGCGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 17602 | 0.72 | 0.328094 |
Target: 5'- aCGUUgGCGgcUCGACCACGCCuGACaagcccGCUGAg -3' miRNA: 3'- -GCGA-UGC--AGCUGGUGCGG-CUG------UGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 16719 | 0.66 | 0.668818 |
Target: 5'- cCGCUgcccauuGCGUCGACCGUGCUucagccugGGCGCUa- -3' miRNA: 3'- -GCGA-------UGCAGCUGGUGCGG--------CUGUGAcu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 16151 | 0.67 | 0.548665 |
Target: 5'- aGUUGCGUcCGGCguUGCC-ACGCUGGg -3' miRNA: 3'- gCGAUGCA-GCUGguGCGGcUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15558 | 0.66 | 0.658874 |
Target: 5'- uGUUGCGgaaGGCUuCaCCGGCACUGAg -3' miRNA: 3'- gCGAUGCag-CUGGuGcGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15460 | 0.69 | 0.43503 |
Target: 5'- aCGCUGaacaacucCGUCGACCuuGCCGACGu--- -3' miRNA: 3'- -GCGAU--------GCAGCUGGugCGGCUGUgacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15002 | 0.66 | 0.658874 |
Target: 5'- gCGCcaUACGUUGcCCGUGCCGguacgcacGCGCUGAu -3' miRNA: 3'- -GCG--AUGCAGCuGGUGCGGC--------UGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 13824 | 0.68 | 0.537874 |
Target: 5'- cCGCaccCGU-GGCCAUuCCGACGCUGAc -3' miRNA: 3'- -GCGau-GCAgCUGGUGcGGCUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 13568 | 0.7 | 0.406431 |
Target: 5'- aCGCccgguucgGCGUCGACUccguucGCGCUGACGCaUGGu -3' miRNA: 3'- -GCGa-------UGCAGCUGG------UGCGGCUGUG-ACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 12390 | 0.77 | 0.140596 |
Target: 5'- uGCcgaagGCGUCGACCACGUUcACGCUGAc -3' miRNA: 3'- gCGa----UGCAGCUGGUGCGGcUGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 11305 | 0.68 | 0.516519 |
Target: 5'- aCGCUugagguauACGggcgCGACCGCGCUGAguuCACgGAa -3' miRNA: 3'- -GCGA--------UGCa---GCUGGUGCGGCU---GUGaCU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 9403 | 0.66 | 0.614536 |
Target: 5'- aCGCUuCGUCGgcguucuucGCCAUGCCGGuuUUGAg -3' miRNA: 3'- -GCGAuGCAGC---------UGGUGCGGCUguGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 9149 | 0.67 | 0.570441 |
Target: 5'- gGUUACGgCGAauCCGuCGCCGACGCg-- -3' miRNA: 3'- gCGAUGCaGCU--GGU-GCGGCUGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 9006 | 0.72 | 0.297043 |
Target: 5'- gCGCUAucgcCGUCGGCauugGCGCCGGuauCGCUGAg -3' miRNA: 3'- -GCGAU----GCAGCUGg---UGCGGCU---GUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 8775 | 0.69 | 0.474903 |
Target: 5'- gCGC-ACGUcCGACCACGUCaacccccugaaGugACUGAc -3' miRNA: 3'- -GCGaUGCA-GCUGGUGCGG-----------CugUGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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