miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8207 5' -55.6 NC_001978.2 + 41278 0.74 0.241883
Target:  5'- aGCUcgACGUCGACCACaucaaGCCGcuuGCAUUGGg -3'
miRNA:   3'- gCGA--UGCAGCUGGUG-----CGGC---UGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 40260 0.69 0.485156
Target:  5'- cCGCUACGUCuuCCGUGCCGuC-CUGGg -3'
miRNA:   3'- -GCGAUGCAGcuGGUGCGGCuGuGACU- -5'
8207 5' -55.6 NC_001978.2 + 39965 0.69 0.468804
Target:  5'- aGCUuccCcUUGACCaaugguuccccgaagACGCCGACGCUGAc -3'
miRNA:   3'- gCGAu--GcAGCUGG---------------UGCGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 39787 0.67 0.559523
Target:  5'- uGUUGCG--GAgCGCGCCGACGCccUGAa -3'
miRNA:   3'- gCGAUGCagCUgGUGCGGCUGUG--ACU- -5'
8207 5' -55.6 NC_001978.2 + 37382 0.68 0.536798
Target:  5'- aGCaacgGCGcCGACCaucgauaGCGCCGcugagGCACUGAc -3'
miRNA:   3'- gCGa---UGCaGCUGG-------UGCGGC-----UGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 36072 0.66 0.658874
Target:  5'- uGCUACacgGGCCAcucaccCGCCGACACcUGGg -3'
miRNA:   3'- gCGAUGcagCUGGU------GCGGCUGUG-ACU- -5'
8207 5' -55.6 NC_001978.2 + 33134 0.72 0.304586
Target:  5'- gGCaaGCGUUGGCaCGuugcCGCCGACGCUGAg -3'
miRNA:   3'- gCGa-UGCAGCUG-GU----GCGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 32888 1.09 0.000729
Target:  5'- gCGCUACGUCGACCACGCCGACACUGAg -3'
miRNA:   3'- -GCGAUGCAGCUGGUGCGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 32253 0.69 0.444819
Target:  5'- gCGCUcaACGUCGACCGgGUcaCGACGCc-- -3'
miRNA:   3'- -GCGA--UGCAGCUGGUgCG--GCUGUGacu -5'
8207 5' -55.6 NC_001978.2 + 31018 0.7 0.415833
Target:  5'- gCGCUAUGUCGcuGCCGugaaGCUGACcgguGCUGAg -3'
miRNA:   3'- -GCGAUGCAGC--UGGUg---CGGCUG----UGACU- -5'
8207 5' -55.6 NC_001978.2 + 30765 0.68 0.516519
Target:  5'- gGCaaggGCGUCGAgCACGuaCCGGCGCUc- -3'
miRNA:   3'- gCGa---UGCAGCUgGUGC--GGCUGUGAcu -5'
8207 5' -55.6 NC_001978.2 + 30739 0.66 0.658874
Target:  5'- cCGUgucgACGUCGACCGaaggggaaguUGCCGACGa--- -3'
miRNA:   3'- -GCGa---UGCAGCUGGU----------GCGGCUGUgacu -5'
8207 5' -55.6 NC_001978.2 + 30411 0.68 0.527156
Target:  5'- uCGCUcgacaaggucACGUCGGCUgagaACGCgGACGCcGAc -3'
miRNA:   3'- -GCGA----------UGCAGCUGG----UGCGgCUGUGaCU- -5'
8207 5' -55.6 NC_001978.2 + 30179 0.67 0.592421
Target:  5'- gCGCUACGUguacgCGACCguugACGgC-ACACUGAa -3'
miRNA:   3'- -GCGAUGCA-----GCUGG----UGCgGcUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 29384 0.69 0.46476
Target:  5'- gCGUgccCGUCGu---CGCCGACGCUGAc -3'
miRNA:   3'- -GCGau-GCAGCugguGCGGCUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 28044 0.75 0.206333
Target:  5'- -uCUACGUCGACC-CGUCGGCGCcgGAc -3'
miRNA:   3'- gcGAUGCAGCUGGuGCGGCUGUGa-CU- -5'
8207 5' -55.6 NC_001978.2 + 26528 0.69 0.43503
Target:  5'- cCGUacgAgGUCGACCACGCCGuuCGCg-- -3'
miRNA:   3'- -GCGa--UgCAGCUGGUGCGGCu-GUGacu -5'
8207 5' -55.6 NC_001978.2 + 25431 0.71 0.379042
Target:  5'- gGCUcgACGUCGcCCAgGCUgaGGCGCUGGg -3'
miRNA:   3'- gCGA--UGCAGCuGGUgCGG--CUGUGACU- -5'
8207 5' -55.6 NC_001978.2 + 22104 0.66 0.614536
Target:  5'- gGUgagUACGUCGGCCgugugcGCGCUGAU-CUGAc -3'
miRNA:   3'- gCG---AUGCAGCUGG------UGCGGCUGuGACU- -5'
8207 5' -55.6 NC_001978.2 + 21949 0.68 0.495513
Target:  5'- aCGCuUGCGUCGACuCAaucgacuucguUGCCGACAUg-- -3'
miRNA:   3'- -GCG-AUGCAGCUG-GU-----------GCGGCUGUGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.