Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8208 | 5' | -62.1 | NC_001978.2 | + | 27843 | 0.66 | 0.312352 |
Target: 5'- cCAGGCUucaUGCGccguGCCGaacugaaCCGUGCGCa -3' miRNA: 3'- -GUUCGG---GCGCuu--CGGCg------GGCACGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 11901 | 0.66 | 0.312352 |
Target: 5'- aUAAGCCCGCGAAuGUCggaGCCUucgGCGUUc -3' miRNA: 3'- -GUUCGGGCGCUU-CGG---CGGGca-CGCGA- -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 33860 | 0.66 | 0.304849 |
Target: 5'- ---aCCCGgGu-GCCGaCCGUGCGCg -3' miRNA: 3'- guucGGGCgCuuCGGCgGGCACGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 21493 | 0.66 | 0.297485 |
Target: 5'- gGGGCUCGacuccGCCGacgugcacCCCGUGCGCUg -3' miRNA: 3'- gUUCGGGCgcuu-CGGC--------GGGCACGCGA- -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 30291 | 0.66 | 0.296756 |
Target: 5'- gAAGCcgCCGagggcgacguguaCGAAGCCGCCCGgcuCGCa -3' miRNA: 3'- gUUCG--GGC-------------GCUUCGGCGGGCac-GCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 27030 | 0.66 | 0.29026 |
Target: 5'- --cGUCgCGUGAAGCucauucCGUUCGUGCGCUa -3' miRNA: 3'- guuCGG-GCGCUUCG------GCGGGCACGCGA- -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 33773 | 0.66 | 0.29026 |
Target: 5'- aAGGCguuCCGCGAAGCgUGCUgG-GCGCUc -3' miRNA: 3'- gUUCG---GGCGCUUCG-GCGGgCaCGCGA- -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 21416 | 0.67 | 0.262075 |
Target: 5'- -cGGUCCuaccnccuuacggGCGAAGCC-CCCGgGCGCg -3' miRNA: 3'- guUCGGG-------------CGCUUCGGcGGGCaCGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 3570 | 0.67 | 0.256194 |
Target: 5'- cCGGGCacgaugaGCGAAGaggguuugGCCCGUGCGCg -3' miRNA: 3'- -GUUCGgg-----CGCUUCgg------CGGGCACGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 28771 | 0.67 | 0.252333 |
Target: 5'- uGAG-CCGCGAAgucGCCGuugauggacaugcgcCCCGUGCGUg -3' miRNA: 3'- gUUCgGGCGCUU---CGGC---------------GGGCACGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 12198 | 0.67 | 0.243512 |
Target: 5'- aAGGaCCGUgccGGAGCCGaccgcaaCCGUGCGCg -3' miRNA: 3'- gUUCgGGCG---CUUCGGCg------GGCACGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 32669 | 0.67 | 0.237369 |
Target: 5'- --cGCCCuggGgGAAGCCGCCgG-GCGUa -3' miRNA: 3'- guuCGGG---CgCUUCGGCGGgCaCGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 25421 | 0.67 | 0.237369 |
Target: 5'- uCAAGCCacauGCGAAGUCGgguuaCCG-GCGCg -3' miRNA: 3'- -GUUCGGg---CGCUUCGGCg----GGCaCGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 40317 | 0.67 | 0.237369 |
Target: 5'- gAAGCCCGCu--GUgCGCCCGUcucaGCGCc -3' miRNA: 3'- gUUCGGGCGcuuCG-GCGGGCA----CGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 19726 | 0.68 | 0.225473 |
Target: 5'- gCGAGCCuUGuCGAAGgCGUCCuUGCGCg -3' miRNA: 3'- -GUUCGG-GC-GCUUCgGCGGGcACGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 38606 | 0.68 | 0.219717 |
Target: 5'- --uGCCCGaCGAaccugaaccGGCC-CCCGUcGCGCUc -3' miRNA: 3'- guuCGGGC-GCU---------UCGGcGGGCA-CGCGA- -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 1828 | 0.68 | 0.219717 |
Target: 5'- uCAAGCCC-UGuuGCCGUCCG-GCGUc -3' miRNA: 3'- -GUUCGGGcGCuuCGGCGGGCaCGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 24369 | 0.68 | 0.214087 |
Target: 5'- aCAAGCCCcggcaCGAAGCgcauugcucCGCCCGggGCGUg -3' miRNA: 3'- -GUUCGGGc----GCUUCG---------GCGGGCa-CGCGa -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 39190 | 0.68 | 0.214087 |
Target: 5'- aAAGcCCCGUGAuGCUGCCCGggugaaugGCgGCUu -3' miRNA: 3'- gUUC-GGGCGCUuCGGCGGGCa-------CG-CGA- -5' |
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8208 | 5' | -62.1 | NC_001978.2 | + | 14284 | 0.68 | 0.208581 |
Target: 5'- cCGGGCgCaGCGAAGCCGaa-GUGCGCc -3' miRNA: 3'- -GUUCGgG-CGCUUCGGCgggCACGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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