miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8208 5' -62.1 NC_001978.2 + 11901 0.66 0.312352
Target:  5'- aUAAGCCCGCGAAuGUCggaGCCUucgGCGUUc -3'
miRNA:   3'- -GUUCGGGCGCUU-CGG---CGGGca-CGCGA- -5'
8208 5' -62.1 NC_001978.2 + 27843 0.66 0.312352
Target:  5'- cCAGGCUucaUGCGccguGCCGaacugaaCCGUGCGCa -3'
miRNA:   3'- -GUUCGG---GCGCuu--CGGCg------GGCACGCGa -5'
8208 5' -62.1 NC_001978.2 + 33860 0.66 0.304849
Target:  5'- ---aCCCGgGu-GCCGaCCGUGCGCg -3'
miRNA:   3'- guucGGGCgCuuCGGCgGGCACGCGa -5'
8208 5' -62.1 NC_001978.2 + 21493 0.66 0.297485
Target:  5'- gGGGCUCGacuccGCCGacgugcacCCCGUGCGCUg -3'
miRNA:   3'- gUUCGGGCgcuu-CGGC--------GGGCACGCGA- -5'
8208 5' -62.1 NC_001978.2 + 30291 0.66 0.296756
Target:  5'- gAAGCcgCCGagggcgacguguaCGAAGCCGCCCGgcuCGCa -3'
miRNA:   3'- gUUCG--GGC-------------GCUUCGGCGGGCac-GCGa -5'
8208 5' -62.1 NC_001978.2 + 27030 0.66 0.29026
Target:  5'- --cGUCgCGUGAAGCucauucCGUUCGUGCGCUa -3'
miRNA:   3'- guuCGG-GCGCUUCG------GCGGGCACGCGA- -5'
8208 5' -62.1 NC_001978.2 + 33773 0.66 0.29026
Target:  5'- aAGGCguuCCGCGAAGCgUGCUgG-GCGCUc -3'
miRNA:   3'- gUUCG---GGCGCUUCG-GCGGgCaCGCGA- -5'
8208 5' -62.1 NC_001978.2 + 21416 0.67 0.262075
Target:  5'- -cGGUCCuaccnccuuacggGCGAAGCC-CCCGgGCGCg -3'
miRNA:   3'- guUCGGG-------------CGCUUCGGcGGGCaCGCGa -5'
8208 5' -62.1 NC_001978.2 + 3570 0.67 0.256194
Target:  5'- cCGGGCacgaugaGCGAAGaggguuugGCCCGUGCGCg -3'
miRNA:   3'- -GUUCGgg-----CGCUUCgg------CGGGCACGCGa -5'
8208 5' -62.1 NC_001978.2 + 28771 0.67 0.252333
Target:  5'- uGAG-CCGCGAAgucGCCGuugauggacaugcgcCCCGUGCGUg -3'
miRNA:   3'- gUUCgGGCGCUU---CGGC---------------GGGCACGCGa -5'
8208 5' -62.1 NC_001978.2 + 12198 0.67 0.243512
Target:  5'- aAGGaCCGUgccGGAGCCGaccgcaaCCGUGCGCg -3'
miRNA:   3'- gUUCgGGCG---CUUCGGCg------GGCACGCGa -5'
8208 5' -62.1 NC_001978.2 + 25421 0.67 0.237369
Target:  5'- uCAAGCCacauGCGAAGUCGgguuaCCG-GCGCg -3'
miRNA:   3'- -GUUCGGg---CGCUUCGGCg----GGCaCGCGa -5'
8208 5' -62.1 NC_001978.2 + 40317 0.67 0.237369
Target:  5'- gAAGCCCGCu--GUgCGCCCGUcucaGCGCc -3'
miRNA:   3'- gUUCGGGCGcuuCG-GCGGGCA----CGCGa -5'
8208 5' -62.1 NC_001978.2 + 32669 0.67 0.237369
Target:  5'- --cGCCCuggGgGAAGCCGCCgG-GCGUa -3'
miRNA:   3'- guuCGGG---CgCUUCGGCGGgCaCGCGa -5'
8208 5' -62.1 NC_001978.2 + 19726 0.68 0.225473
Target:  5'- gCGAGCCuUGuCGAAGgCGUCCuUGCGCg -3'
miRNA:   3'- -GUUCGG-GC-GCUUCgGCGGGcACGCGa -5'
8208 5' -62.1 NC_001978.2 + 1828 0.68 0.219717
Target:  5'- uCAAGCCC-UGuuGCCGUCCG-GCGUc -3'
miRNA:   3'- -GUUCGGGcGCuuCGGCGGGCaCGCGa -5'
8208 5' -62.1 NC_001978.2 + 38606 0.68 0.219717
Target:  5'- --uGCCCGaCGAaccugaaccGGCC-CCCGUcGCGCUc -3'
miRNA:   3'- guuCGGGC-GCU---------UCGGcGGGCA-CGCGA- -5'
8208 5' -62.1 NC_001978.2 + 39190 0.68 0.214087
Target:  5'- aAAGcCCCGUGAuGCUGCCCGggugaaugGCgGCUu -3'
miRNA:   3'- gUUC-GGGCGCUuCGGCGGGCa-------CG-CGA- -5'
8208 5' -62.1 NC_001978.2 + 24369 0.68 0.214087
Target:  5'- aCAAGCCCcggcaCGAAGCgcauugcucCGCCCGggGCGUg -3'
miRNA:   3'- -GUUCGGGc----GCUUCG---------GCGGGCa-CGCGa -5'
8208 5' -62.1 NC_001978.2 + 14284 0.68 0.208581
Target:  5'- cCGGGCgCaGCGAAGCCGaa-GUGCGCc -3'
miRNA:   3'- -GUUCGgG-CGCUUCGGCgggCACGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.