Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 34240 | 1.1 | 0.000581 |
Target: 5'- cAACGCGAUACGUCAUGCGCCGUCGGCg -3' miRNA: 3'- -UUGCGCUAUGCAGUACGCGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 14556 | 0.66 | 0.65191 |
Target: 5'- aAGCGCGAgaACGUCGcugccccugacggugGCGCUcUUGGCa -3' miRNA: 3'- -UUGCGCUa-UGCAGUa--------------CGCGGcAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 2160 | 0.66 | 0.639579 |
Target: 5'- uGCGCGGUGCGUCGacaUGguUGCCGcaUGGUc -3' miRNA: 3'- uUGCGCUAUGCAGU---AC--GCGGCa-GCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 5781 | 0.66 | 0.613785 |
Target: 5'- gGACGCGA-ACgGUCAguaccUGUGgcaguccgcucuuaCCGUCGGCg -3' miRNA: 3'- -UUGCGCUaUG-CAGU-----ACGC--------------GGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 18095 | 0.66 | 0.605947 |
Target: 5'- aAGCGCGGuUAC-UCcgGCGCCGacgcugacggUUGGCc -3' miRNA: 3'- -UUGCGCU-AUGcAGuaCGCGGC----------AGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 37843 | 0.67 | 0.572523 |
Target: 5'- gGACGUGggGCGaaGUGCcCCuuGUCGGCg -3' miRNA: 3'- -UUGCGCuaUGCagUACGcGG--CAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 1454 | 0.67 | 0.547193 |
Target: 5'- uGACGCG-UACGUguUGaCucaggacaccuucgGCCGUUGGCg -3' miRNA: 3'- -UUGCGCuAUGCAguAC-G--------------CGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 38886 | 0.67 | 0.539553 |
Target: 5'- cAGCGCGAauugggcgggUACGUCGgcgggaagGCGCUuaCGGCu -3' miRNA: 3'- -UUGCGCU----------AUGCAGUa-------CGCGGcaGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 3604 | 0.68 | 0.507251 |
Target: 5'- cGCGCGAaGCGUgGcGUGCCGcuaacucCGGCg -3' miRNA: 3'- uUGCGCUaUGCAgUaCGCGGCa------GCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 30923 | 0.68 | 0.496664 |
Target: 5'- uGACG-GGUGCGaCAugaaggcaugUGCGCCcagGUCGGCg -3' miRNA: 3'- -UUGCgCUAUGCaGU----------ACGCGG---CAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 4249 | 0.73 | 0.267048 |
Target: 5'- cGCGUGAgcuuCGUUu--CGCCGUCGGCa -3' miRNA: 3'- uUGCGCUau--GCAGuacGCGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 25243 | 0.72 | 0.311369 |
Target: 5'- cACGgGcgACGUCGUcaGCuCCGUCGGCc -3' miRNA: 3'- uUGCgCuaUGCAGUA--CGcGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 28938 | 0.7 | 0.367208 |
Target: 5'- aGGCGCGAaGCGcgaccggaagguguUCAaggGCGCCGgauUCGGCa -3' miRNA: 3'- -UUGCGCUaUGC--------------AGUa--CGCGGC---AGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 8997 | 0.7 | 0.369864 |
Target: 5'- -cUGCGGgugGCGcUAU-CGCCGUCGGCa -3' miRNA: 3'- uuGCGCUa--UGCaGUAcGCGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 24563 | 0.69 | 0.425664 |
Target: 5'- cAAUGCGuu-CGUCGgcgGCGUCaugGUCGGCa -3' miRNA: 3'- -UUGCGCuauGCAGUa--CGCGG---CAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 41192 | 0.68 | 0.475799 |
Target: 5'- cAACGCugcggcgaaGAUGCGUCGUGCuauCCGUaaGGCa -3' miRNA: 3'- -UUGCG---------CUAUGCAGUACGc--GGCAg-CCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 31736 | 0.73 | 0.25345 |
Target: 5'- cGACGCa--AUGUCAUaaaggGCGUCGUCGGCg -3' miRNA: 3'- -UUGCGcuaUGCAGUA-----CGCGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 31367 | 0.66 | 0.628362 |
Target: 5'- gAAUGCugaacGGUGCugaUCAcGuCGCCGUCGGCg -3' miRNA: 3'- -UUGCG-----CUAUGc--AGUaC-GCGGCAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 32384 | 0.66 | 0.628362 |
Target: 5'- uGACGcCGucuUGCGUg--GCGCCuUCGGCu -3' miRNA: 3'- -UUGC-GCu--AUGCAguaCGCGGcAGCCG- -5' |
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8211 | 3' | -55.4 | NC_001978.2 | + | 12459 | 0.66 | 0.617147 |
Target: 5'- cAGCGUGA-ACGUgGUcGaCGCCuUCGGCa -3' miRNA: 3'- -UUGCGCUaUGCAgUA-C-GCGGcAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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