Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 15733 | 0.66 | 0.594769 |
Target: 5'- --aGUGAacuggGCGUaCGUGuCGCCGUCGaGCc -3' miRNA: 3'- uugCGCUa----UGCA-GUAC-GCGGCAGC-CG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 21469 | 0.72 | 0.311369 |
Target: 5'- --gGCG-UGCGUCu--UGCCGUCGGCg -3' miRNA: 3'- uugCGCuAUGCAGuacGCGGCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 17862 | 0.72 | 0.296001 |
Target: 5'- aAACGCGGcauagUugGUCGUGuCGgCGUCGGa -3' miRNA: 3'- -UUGCGCU-----AugCAGUAC-GCgGCAGCCg -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 31736 | 0.73 | 0.25345 |
Target: 5'- cGACGCa--AUGUCAUaaaggGCGUCGUCGGCg -3' miRNA: 3'- -UUGCGcuaUGCAGUA-----CGCGGCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 38729 | 0.68 | 0.495611 |
Target: 5'- aAGCGCGAcACGUCAuagacaaugaucaUGUugaGCCGccCGGCg -3' miRNA: 3'- -UUGCGCUaUGCAGU-------------ACG---CGGCa-GCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 5205 | 0.66 | 0.639579 |
Target: 5'- gAACgGCGu--CGUCGU-CGUgGUCGGCg -3' miRNA: 3'- -UUG-CGCuauGCAGUAcGCGgCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 31367 | 0.66 | 0.628362 |
Target: 5'- gAAUGCugaacGGUGCugaUCAcGuCGCCGUCGGCg -3' miRNA: 3'- -UUGCG-----CUAUGc--AGUaC-GCGGCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 32384 | 0.66 | 0.628362 |
Target: 5'- uGACGcCGucuUGCGUg--GCGCCuUCGGCu -3' miRNA: 3'- -UUGC-GCu--AUGCAguaCGCGGcAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 12459 | 0.66 | 0.617147 |
Target: 5'- cAGCGUGA-ACGUgGUcGaCGCCuUCGGCa -3' miRNA: 3'- -UUGCGCUaUGCAgUA-C-GCGGcAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 20360 | 0.7 | 0.397135 |
Target: 5'- --aGCGAaGCGUguUGCGgugcuUCGUCGGCa -3' miRNA: 3'- uugCGCUaUGCAguACGC-----GGCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 3696 | 0.69 | 0.435442 |
Target: 5'- uACGCGGUgcGCGUUGUcGaCGCCGgaguuagCGGCa -3' miRNA: 3'- uUGCGCUA--UGCAGUA-C-GCGGCa------GCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 40264 | 0.67 | 0.583625 |
Target: 5'- uACGcCGcUACGUCuuccGUGCCGUCcugGGCg -3' miRNA: 3'- uUGC-GCuAUGCAGua--CGCGGCAG---CCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 37514 | 0.7 | 0.369864 |
Target: 5'- uGCGCGA-GCGUCGUcUGUcuuCGUCGGCg -3' miRNA: 3'- uUGCGCUaUGCAGUAcGCG---GCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 22137 | 0.67 | 0.572523 |
Target: 5'- aGGCGCucaaacAgGUCGUGCGCUucgcugcccagGUCGGCg -3' miRNA: 3'- -UUGCGcua---UgCAGUACGCGG-----------CAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 35645 | 0.68 | 0.486178 |
Target: 5'- -uCGCGccgACGcUCAgggGCGCCGUCuccGGCu -3' miRNA: 3'- uuGCGCua-UGC-AGUa--CGCGGCAG---CCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 34288 | 0.71 | 0.343902 |
Target: 5'- -uCGCGuUGCGcUCA-GCGUgGUCGGCa -3' miRNA: 3'- uuGCGCuAUGC-AGUaCGCGgCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 22342 | 0.73 | 0.274065 |
Target: 5'- gGAC-CGGUccgGCGUCggGuUGCCGUCGGCg -3' miRNA: 3'- -UUGcGCUA---UGCAGuaC-GCGGCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 30843 | 0.68 | 0.496664 |
Target: 5'- cAUGCGGUcgucacgaACGUCAcGaagGUCGUCGGCa -3' miRNA: 3'- uUGCGCUA--------UGCAGUaCg--CGGCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 24987 | 0.68 | 0.486178 |
Target: 5'- cACGcCGGaagcAUGUUGUGCGCagCGUCGGCg -3' miRNA: 3'- uUGC-GCUa---UGCAGUACGCG--GCAGCCG- -5' |
|||||||
8211 | 3' | -55.4 | NC_001978.2 | + | 32667 | 0.66 | 0.599237 |
Target: 5'- cACGCGAUacucguacGCGUCgagcaagggcgaaggGUucaGCGCCGUCguGGCa -3' miRNA: 3'- uUGCGCUA--------UGCAG---------------UA---CGCGGCAG--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home