miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8212 3' -54.4 NC_001978.2 + 3455 0.67 0.627629
Target:  5'- cGGGUGCUcgccuaucucgUAUgCGCGUGAGUccaucGGGCu- -3'
miRNA:   3'- -CCCACGG-----------AUGaGUGCACUCA-----UCCGuc -5'
8212 3' -54.4 NC_001978.2 + 22722 0.67 0.616319
Target:  5'- cGGGUGCCUAC--AUGgggGAGUaAGGgAGu -3'
miRNA:   3'- -CCCACGGAUGagUGCa--CUCA-UCCgUC- -5'
8212 3' -54.4 NC_001978.2 + 24398 0.68 0.582516
Target:  5'- ----aCCUACUCACGUGAGUAcGCuGa -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUcCGuC- -5'
8212 3' -54.4 NC_001978.2 + 32580 0.68 0.527159
Target:  5'- cGGGgcgcucaGCgUACUCACGUGAcUAGGUu- -3'
miRNA:   3'- -CCCa------CGgAUGAGUGCACUcAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 23479 0.69 0.505551
Target:  5'- cGGGUGCCcgaaGCUCuuCGaUGAGcggaAGGCAGc -3'
miRNA:   3'- -CCCACGGa---UGAGu-GC-ACUCa---UCCGUC- -5'
8212 3' -54.4 NC_001978.2 + 27514 0.7 0.452319
Target:  5'- ----aCCUACUCACGUGAGUagcuuggGGGCGc -3'
miRNA:   3'- cccacGGAUGAGUGCACUCA-------UCCGUc -5'
8212 3' -54.4 NC_001978.2 + 6160 0.73 0.30871
Target:  5'- aGGGcGCCcaaccUACUCACGUGAGUAcGCuGa -3'
miRNA:   3'- -CCCaCGG-----AUGAGUGCACUCAUcCGuC- -5'
8212 3' -54.4 NC_001978.2 + 19240 0.75 0.225278
Target:  5'- ---aG-CUACUCACGUGAGUAGGCuGg -3'
miRNA:   3'- cccaCgGAUGAGUGCACUCAUCCGuC- -5'
8212 3' -54.4 NC_001978.2 + 29517 0.76 0.196571
Target:  5'- ----aCCUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 19179 0.76 0.180921
Target:  5'- ---aGCCUACUCACGUGAGUagcuuggagcguGGGCuAGg -3'
miRNA:   3'- cccaCGGAUGAGUGCACUCA------------UCCG-UC- -5'
8212 3' -54.4 NC_001978.2 + 24319 0.77 0.177927
Target:  5'- cGGG-GCUugucgucguucagcgUACUCACGUGAGUAGGUugAGa -3'
miRNA:   3'- -CCCaCGG---------------AUGAGUGCACUCAUCCG--UC- -5'
8212 3' -54.4 NC_001978.2 + 19829 0.78 0.138043
Target:  5'- -cGUGCguagccgacucuacaCUACUCACGUGAGUAGGCuGa -3'
miRNA:   3'- ccCACG---------------GAUGAGUGCACUCAUCCGuC- -5'
8212 3' -54.4 NC_001978.2 + 27595 0.78 0.138043
Target:  5'- gGGGaaUGCCgaagcgcccccaagcUACUCACGUGAGUAGGUugAGg -3'
miRNA:   3'- -CCC--ACGG---------------AUGAGUGCACUCAUCCG--UC- -5'
8212 3' -54.4 NC_001978.2 + 29709 0.79 0.128884
Target:  5'- --aUGCCUACUCACGUGAGUAGuCAc -3'
miRNA:   3'- cccACGGAUGAGUGCACUCAUCcGUc -5'
8212 3' -54.4 NC_001978.2 + 2845 0.79 0.125236
Target:  5'- ----aCCUACUCACGUGAGUAGGUAa -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGUc -5'
8212 3' -54.4 NC_001978.2 + 6080 0.79 0.121683
Target:  5'- cGGGcGCUcagcgUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- -CCCaCGG-----AUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 11069 0.79 0.118225
Target:  5'- cGGUuccuaCCUACUCACGUGAGUAGGUu- -3'
miRNA:   3'- cCCAc----GGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 41049 0.8 0.105288
Target:  5'- ----aCCUACUCACGUGAGUAGGCuGg -3'
miRNA:   3'- cccacGGAUGAGUGCACUCAUCCGuC- -5'
8212 3' -54.4 NC_001978.2 + 34777 0.8 0.102268
Target:  5'- -cGUGuucaaCCUACUCACGUGAGUAGGCu- -3'
miRNA:   3'- ccCAC-----GGAUGAGUGCACUCAUCCGuc -5'
8212 3' -54.4 NC_001978.2 + 17059 0.81 0.085798
Target:  5'- aGGGcgcuaCCUACUCACGUGAGUAGGUugAGa -3'
miRNA:   3'- -CCCac---GGAUGAGUGCACUCAUCCG--UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.