Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 3455 | 0.67 | 0.627629 |
Target: 5'- cGGGUGCUcgccuaucucgUAUgCGCGUGAGUccaucGGGCu- -3' miRNA: 3'- -CCCACGG-----------AUGaGUGCACUCA-----UCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 22722 | 0.67 | 0.616319 |
Target: 5'- cGGGUGCCUAC--AUGgggGAGUaAGGgAGu -3' miRNA: 3'- -CCCACGGAUGagUGCa--CUCA-UCCgUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 24398 | 0.68 | 0.582516 |
Target: 5'- ----aCCUACUCACGUGAGUAcGCuGa -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUcCGuC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 32580 | 0.68 | 0.527159 |
Target: 5'- cGGGgcgcucaGCgUACUCACGUGAcUAGGUu- -3' miRNA: 3'- -CCCa------CGgAUGAGUGCACUcAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 23479 | 0.69 | 0.505551 |
Target: 5'- cGGGUGCCcgaaGCUCuuCGaUGAGcggaAGGCAGc -3' miRNA: 3'- -CCCACGGa---UGAGu-GC-ACUCa---UCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 27514 | 0.7 | 0.452319 |
Target: 5'- ----aCCUACUCACGUGAGUagcuuggGGGCGc -3' miRNA: 3'- cccacGGAUGAGUGCACUCA-------UCCGUc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 6160 | 0.73 | 0.30871 |
Target: 5'- aGGGcGCCcaaccUACUCACGUGAGUAcGCuGa -3' miRNA: 3'- -CCCaCGG-----AUGAGUGCACUCAUcCGuC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 19240 | 0.75 | 0.225278 |
Target: 5'- ---aG-CUACUCACGUGAGUAGGCuGg -3' miRNA: 3'- cccaCgGAUGAGUGCACUCAUCCGuC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 29517 | 0.76 | 0.196571 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 19179 | 0.76 | 0.180921 |
Target: 5'- ---aGCCUACUCACGUGAGUagcuuggagcguGGGCuAGg -3' miRNA: 3'- cccaCGGAUGAGUGCACUCA------------UCCG-UC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 24319 | 0.77 | 0.177927 |
Target: 5'- cGGG-GCUugucgucguucagcgUACUCACGUGAGUAGGUugAGa -3' miRNA: 3'- -CCCaCGG---------------AUGAGUGCACUCAUCCG--UC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 19829 | 0.78 | 0.138043 |
Target: 5'- -cGUGCguagccgacucuacaCUACUCACGUGAGUAGGCuGa -3' miRNA: 3'- ccCACG---------------GAUGAGUGCACUCAUCCGuC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 27595 | 0.78 | 0.138043 |
Target: 5'- gGGGaaUGCCgaagcgcccccaagcUACUCACGUGAGUAGGUugAGg -3' miRNA: 3'- -CCC--ACGG---------------AUGAGUGCACUCAUCCG--UC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 29709 | 0.79 | 0.128884 |
Target: 5'- --aUGCCUACUCACGUGAGUAGuCAc -3' miRNA: 3'- cccACGGAUGAGUGCACUCAUCcGUc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 2845 | 0.79 | 0.125236 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUAa -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGUc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 6080 | 0.79 | 0.121683 |
Target: 5'- cGGGcGCUcagcgUACUCACGUGAGUAGGUu- -3' miRNA: 3'- -CCCaCGG-----AUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 11069 | 0.79 | 0.118225 |
Target: 5'- cGGUuccuaCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- cCCAc----GGAUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 41049 | 0.8 | 0.105288 |
Target: 5'- ----aCCUACUCACGUGAGUAGGCuGg -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGuC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 34777 | 0.8 | 0.102268 |
Target: 5'- -cGUGuucaaCCUACUCACGUGAGUAGGCu- -3' miRNA: 3'- ccCAC-----GGAUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 17059 | 0.81 | 0.085798 |
Target: 5'- aGGGcgcuaCCUACUCACGUGAGUAGGUugAGa -3' miRNA: 3'- -CCCac---GGAUGAGUGCACUCAUCCG--UC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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