Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 16991 | 0.82 | 0.078541 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUAGc -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 11137 | 0.83 | 0.060134 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 34805 | 0.83 | 0.060134 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 34845 | 0.84 | 0.054983 |
Target: 5'- ---aGCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- cccaCGGAUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 29596 | 0.84 | 0.050866 |
Target: 5'- gGGGUGucagaugaucuucaaCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- -CCCAC---------------GGAUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 19751 | 0.84 | 0.053363 |
Target: 5'- ---aGCCUACUCACGUGAGUAGuGUAGa -3' miRNA: 3'- cccaCGGAUGAGUGCACUCAUC-CGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 2912 | 0.85 | 0.048776 |
Target: 5'- cGGGUcuuaCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- -CCCAc---GGAUGAGUGCACUCAUCCGuc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 34734 | 0.85 | 0.044574 |
Target: 5'- uGGGaagccccuaCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- -CCCac-------GGAUGAGUGCACUCAUCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 29774 | 0.9 | 0.019088 |
Target: 5'- aGGUGaCUACUCACGUGAGUAGGCAu -3' miRNA: 3'- cCCACgGAUGAGUGCACUCAUCCGUc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 34458 | 0.91 | 0.015897 |
Target: 5'- --cUGCCUACUCACGUGAGUAGGCAc -3' miRNA: 3'- cccACGGAUGAGUGCACUCAUCCGUc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 40988 | 0.91 | 0.015897 |
Target: 5'- ---aGCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- cccaCGGAUGAGUGCACUCAUCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 1283 | 0.92 | 0.015419 |
Target: 5'- --cUGCCUACUCACGUGAGUAGGCAu -3' miRNA: 3'- cccACGGAUGAGUGCACUCAUCCGUc -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 1219 | 0.95 | 0.008365 |
Target: 5'- --aUGCCUACUCACGUGAGUAGGCAGc -3' miRNA: 3'- cccACGGAUGAGUGCACUCAUCCGUC- -5' |
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8212 | 3' | -54.4 | NC_001978.2 | + | 34391 | 1.12 | 0.000544 |
Target: 5'- gGGGUGCCUACUCACGUGAGUAGGCAGg -3' miRNA: 3'- -CCCACGGAUGAGUGCACUCAUCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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