Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 27595 | 0.78 | 0.138043 |
Target: 5'- gGGGaaUGCCgaagcgcccccaagcUACUCACGUGAGUAGGUugAGg -3' miRNA: 3'- -CCC--ACGG---------------AUGAGUGCACUCAUCCG--UC- -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 29517 | 0.76 | 0.196571 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGuc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 29596 | 0.84 | 0.050866 |
Target: 5'- gGGGUGucagaugaucuucaaCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- -CCCAC---------------GGAUGAGUGCACUCAUCCGuc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 29709 | 0.79 | 0.128884 |
Target: 5'- --aUGCCUACUCACGUGAGUAGuCAc -3' miRNA: 3'- cccACGGAUGAGUGCACUCAUCcGUc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 29774 | 0.9 | 0.019088 |
Target: 5'- aGGUGaCUACUCACGUGAGUAGGCAu -3' miRNA: 3'- cCCACgGAUGAGUGCACUCAUCCGUc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 32580 | 0.68 | 0.527159 |
Target: 5'- cGGGgcgcucaGCgUACUCACGUGAcUAGGUu- -3' miRNA: 3'- -CCCa------CGgAUGAGUGCACUcAUCCGuc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 34391 | 1.12 | 0.000544 |
Target: 5'- gGGGUGCCUACUCACGUGAGUAGGCAGg -3' miRNA: 3'- -CCCACGGAUGAGUGCACUCAUCCGUC- -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 34458 | 0.91 | 0.015897 |
Target: 5'- --cUGCCUACUCACGUGAGUAGGCAc -3' miRNA: 3'- cccACGGAUGAGUGCACUCAUCCGUc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 34734 | 0.85 | 0.044574 |
Target: 5'- uGGGaagccccuaCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- -CCCac-------GGAUGAGUGCACUCAUCCGUC- -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 34777 | 0.8 | 0.102268 |
Target: 5'- -cGUGuucaaCCUACUCACGUGAGUAGGCu- -3' miRNA: 3'- ccCAC-----GGAUGAGUGCACUCAUCCGuc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 34805 | 0.83 | 0.060134 |
Target: 5'- ----aCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGUC- -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 34845 | 0.84 | 0.054983 |
Target: 5'- ---aGCCUACUCACGUGAGUAGGUu- -3' miRNA: 3'- cccaCGGAUGAGUGCACUCAUCCGuc -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 40988 | 0.91 | 0.015897 |
Target: 5'- ---aGCCUACUCACGUGAGUAGGUAGg -3' miRNA: 3'- cccaCGGAUGAGUGCACUCAUCCGUC- -5' |
|||||||
8212 | 3' | -54.4 | NC_001978.2 | + | 41049 | 0.8 | 0.105288 |
Target: 5'- ----aCCUACUCACGUGAGUAGGCuGg -3' miRNA: 3'- cccacGGAUGAGUGCACUCAUCCGuC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home