miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8215 3' -62.3 NC_001978.2 + 17795 0.67 0.281294
Target:  5'- cGCCGAcaCGACCAACUaUGCCGcGUUUCa -3'
miRNA:   3'- uCGGCU--GCUGGUUGG-GCGGC-CAGGGc -5'
8215 3' -62.3 NC_001978.2 + 20579 0.66 0.324761
Target:  5'- -cCCGGCGACCggUCUGCCcGaCCUGa -3'
miRNA:   3'- ucGGCUGCUGGuuGGGCGGcCaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 22271 0.75 0.071092
Target:  5'- cGCCGACGG-CAACCCGacgccggaCCGGUCCgGg -3'
miRNA:   3'- uCGGCUGCUgGUUGGGC--------GGCCAGGgC- -5'
8215 3' -62.3 NC_001978.2 + 23321 0.66 0.302427
Target:  5'- -aUCGACGuguucACCGACCgGCCGaaGUCCCc -3'
miRNA:   3'- ucGGCUGC-----UGGUUGGgCGGC--CAGGGc -5'
8215 3' -62.3 NC_001978.2 + 23449 0.7 0.173849
Target:  5'- cGCCGACGAagagaugaucggUCAGCCgUGCgGGUgCCCGa -3'
miRNA:   3'- uCGGCUGCU------------GGUUGG-GCGgCCA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 23874 0.69 0.187983
Target:  5'- cGCCGugaagGCG-CCAcuguggcaguACCCGCCGGaagCCCGu -3'
miRNA:   3'- uCGGC-----UGCuGGU----------UGGGCGGCCa--GGGC- -5'
8215 3' -62.3 NC_001978.2 + 24037 0.67 0.26721
Target:  5'- cGUCGGCGACCugaucaauuacgcGACCCGUugCGGgaaucgcgCCCGu -3'
miRNA:   3'- uCGGCUGCUGG-------------UUGGGCG--GCCa-------GGGC- -5'
8215 3' -62.3 NC_001978.2 + 27178 0.66 0.332474
Target:  5'- cGCCca-GGCCAcaauGCCCGCCGacuccgCCCGa -3'
miRNA:   3'- uCGGcugCUGGU----UGGGCGGCca----GGGC- -5'
8215 3' -62.3 NC_001978.2 + 27213 0.71 0.148399
Target:  5'- cGGgCGACGuCCGaugcGCUCGCCGGuuucuUCCCGg -3'
miRNA:   3'- -UCgGCUGCuGGU----UGGGCGGCC-----AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 27446 0.7 0.169352
Target:  5'- cGCUGACGcGCCuGCcgCCGCuacCGGUCCCGg -3'
miRNA:   3'- uCGGCUGC-UGGuUG--GGCG---GCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 27838 0.7 0.181738
Target:  5'- aAGCCGcCGACUAcguacugaagcacuGCCC-CCGGUUCCu -3'
miRNA:   3'- -UCGGCuGCUGGU--------------UGGGcGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 28097 0.66 0.34032
Target:  5'- gGGUCGACguagaacgcacuGAgCGGCUUgagGCCGGUCCCa -3'
miRNA:   3'- -UCGGCUG------------CUgGUUGGG---CGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 28184 0.66 0.332474
Target:  5'- aGGUCGAU-ACCcGCCCaGCCGGUUUCu -3'
miRNA:   3'- -UCGGCUGcUGGuUGGG-CGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 29020 0.68 0.254963
Target:  5'- cAGaCCGgaGCGACCGaagcggagauuGCCCGUgCGGUCgCCGa -3'
miRNA:   3'- -UC-GGC--UGCUGGU-----------UGGGCG-GCCAG-GGC- -5'
8215 3' -62.3 NC_001978.2 + 29397 0.78 0.042937
Target:  5'- cGCCGACG-CUGACCUaggggGCCGGUCCUGg -3'
miRNA:   3'- uCGGCUGCuGGUUGGG-----CGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 29442 0.67 0.281294
Target:  5'- cGCCGACGugUGACCCuccguggauuuGCCGaaccuaacGUUCCGu -3'
miRNA:   3'- uCGGCUGCugGUUGGG-----------CGGC--------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 29963 0.68 0.230689
Target:  5'- cGCCGACGACCuugCCGaCCGGcuUgCCGc -3'
miRNA:   3'- uCGGCUGCUGGuugGGC-GGCC--AgGGC- -5'
8215 3' -62.3 NC_001978.2 + 32090 0.67 0.281294
Target:  5'- uGCCGuucCGGCCGACCgUGCCGuGaugacCCCGg -3'
miRNA:   3'- uCGGCu--GCUGGUUGG-GCGGC-Ca----GGGC- -5'
8215 3' -62.3 NC_001978.2 + 32097 0.67 0.29525
Target:  5'- aAGCCGACGACgCGccCCCGCUcagCCUGa -3'
miRNA:   3'- -UCGGCUGCUG-GUu-GGGCGGccaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 32732 0.66 0.30026
Target:  5'- cGcCCGGCGGCuucccccagggcguCAGCgucaguCgGCCGGUCCCGg -3'
miRNA:   3'- uC-GGCUGCUG--------------GUUG------GgCGGCCAGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.