miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8215 3' -62.3 NC_001978.2 + 540 0.67 0.288205
Target:  5'- uGCCGcUGAagcCCGGaagguugCCGCCGGUCCUGa -3'
miRNA:   3'- uCGGCuGCU---GGUUg------GGCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 1972 0.68 0.236569
Target:  5'- aGGCUGACGAcCCGACgcuuuUCuaCGGUCCUGg -3'
miRNA:   3'- -UCGGCUGCU-GGUUG-----GGcgGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 2209 0.7 0.16496
Target:  5'- uGCCGACGA-CGACCCGCUuGagCCGg -3'
miRNA:   3'- uCGGCUGCUgGUUGGGCGGcCagGGC- -5'
8215 3' -62.3 NC_001978.2 + 2478 0.67 0.267868
Target:  5'- aAGCCGACGGCUu-CCCGguugaGGcguUCCCGa -3'
miRNA:   3'- -UCGGCUGCUGGuuGGGCgg---CC---AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 5451 0.66 0.34032
Target:  5'- cGGCCGucucgcCGACaauCCCGgCGGUcgCCCGa -3'
miRNA:   3'- -UCGGCu-----GCUGguuGGGCgGCCA--GGGC- -5'
8215 3' -62.3 NC_001978.2 + 5654 0.78 0.045427
Target:  5'- uGCCGcGCGGCUGACCCguGCCGGUaCCCGu -3'
miRNA:   3'- uCGGC-UGCUGGUUGGG--CGGCCA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 6806 0.74 0.091169
Target:  5'- uGCCGugaACG-CCGACCUuguGUCGGUCCCGg -3'
miRNA:   3'- uCGGC---UGCuGGUUGGG---CGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 9064 0.66 0.331697
Target:  5'- uGCCGACGGCgAuagcgccACCCGCagcaaGGgcaagCCCc -3'
miRNA:   3'- uCGGCUGCUGgU-------UGGGCGg----CCa----GGGc -5'
8215 3' -62.3 NC_001978.2 + 9214 0.67 0.267868
Target:  5'- cGUCGGCGACgGAUUCGCCGuaaCCGg -3'
miRNA:   3'- uCGGCUGCUGgUUGGGCGGCcagGGC- -5'
8215 3' -62.3 NC_001978.2 + 11055 0.66 0.320198
Target:  5'- gGGUCGGCguucgucugcacguuGACCGucACgCCGCCGGaaCCCGa -3'
miRNA:   3'- -UCGGCUG---------------CUGGU--UG-GGCGGCCa-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 11544 0.66 0.34032
Target:  5'- cGUgGGCGACgCuGCCCGCaCGGUgacggUCCGg -3'
miRNA:   3'- uCGgCUGCUG-GuUGGGCG-GCCA-----GGGC- -5'
8215 3' -62.3 NC_001978.2 + 11735 0.68 0.242573
Target:  5'- uGCCGuacugagugaaGCGGCUuACCgggucguccggCGCCGGUCCCu -3'
miRNA:   3'- uCGGC-----------UGCUGGuUGG-----------GCGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 12901 0.71 0.140699
Target:  5'- cGGCCGACG-CC-ACCCGCCGacgugcUUCCGu -3'
miRNA:   3'- -UCGGCUGCuGGuUGGGCGGCc-----AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 13220 0.67 0.288205
Target:  5'- uGGaccaCGACGGCCGACcuugCCGCCGGaacgCUCa -3'
miRNA:   3'- -UCg---GCUGCUGGUUG----GGCGGCCa---GGGc -5'
8215 3' -62.3 NC_001978.2 + 13400 0.69 0.208393
Target:  5'- cGGCUGACGACgucggGGCgUGUCGuGUCCCGg -3'
miRNA:   3'- -UCGGCUGCUGg----UUGgGCGGC-CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 14118 0.69 0.189942
Target:  5'- aAGCCuGAcgugcucgcgaaguuCGACCGuuACCCGCCGGUCg-- -3'
miRNA:   3'- -UCGG-CU---------------GCUGGU--UGGGCGGCCAGggc -5'
8215 3' -62.3 NC_001978.2 + 15483 0.71 0.152392
Target:  5'- uGCCGACGucgccccuGCCGACCCgacuacGCCGacguacguugccGUCCCGg -3'
miRNA:   3'- uCGGCUGC--------UGGUUGGG------CGGC------------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 15713 0.66 0.324761
Target:  5'- cGCCGuCGAgccCCAGCgaagCCGCCGGaaCCGu -3'
miRNA:   3'- uCGGCuGCU---GGUUG----GGCGGCCagGGC- -5'
8215 3' -62.3 NC_001978.2 + 15945 0.72 0.123025
Target:  5'- gGGCgCGACGggcGCCGACUCGacguucCCGGUCCCc -3'
miRNA:   3'- -UCG-GCUGC---UGGUUGGGC------GGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 17654 0.71 0.140699
Target:  5'- gAGCCGccaACGucGCCAACgUCGCCGGUCgCCu -3'
miRNA:   3'- -UCGGC---UGC--UGGUUG-GGCGGCCAG-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.