miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8215 3' -62.3 NC_001978.2 + 29442 0.67 0.281294
Target:  5'- cGCCGACGugUGACCCuccguggauuuGCCGaaccuaacGUUCCGu -3'
miRNA:   3'- uCGGCUGCugGUUGGG-----------CGGC--------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 15945 0.72 0.123025
Target:  5'- gGGCgCGACGggcGCCGACUCGacguucCCGGUCCCc -3'
miRNA:   3'- -UCG-GCUGC---UGGUUGGGC------GGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 27213 0.71 0.148399
Target:  5'- cGGgCGACGuCCGaugcGCUCGCCGGuuucuUCCCGg -3'
miRNA:   3'- -UCgGCUGCuGGU----UGGGCGGCC-----AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 1972 0.68 0.236569
Target:  5'- aGGCUGACGAcCCGACgcuuuUCuaCGGUCCUGg -3'
miRNA:   3'- -UCGGCUGCU-GGUUG-----GGcgGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 34644 0.68 0.242573
Target:  5'- gAGCCGACG-CCGAcugagcCCCGuuGcaCCCGg -3'
miRNA:   3'- -UCGGCUGCuGGUU------GGGCggCcaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 29020 0.68 0.254963
Target:  5'- cAGaCCGgaGCGACCGaagcggagauuGCCCGUgCGGUCgCCGa -3'
miRNA:   3'- -UC-GGC--UGCUGGU-----------UGGGCG-GCCAG-GGC- -5'
8215 3' -62.3 NC_001978.2 + 24037 0.67 0.26721
Target:  5'- cGUCGGCGACCugaucaauuacgcGACCCGUugCGGgaaucgcgCCCGu -3'
miRNA:   3'- uCGGCUGCUGG-------------UUGGGCG--GCCa-------GGGC- -5'
8215 3' -62.3 NC_001978.2 + 2478 0.67 0.267868
Target:  5'- aAGCCGACGGCUu-CCCGguugaGGcguUCCCGa -3'
miRNA:   3'- -UCGGCUGCUGGuuGGGCgg---CC---AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 33846 0.67 0.267868
Target:  5'- gGGCCGACGGCguuACCCG--GGUgCCGa -3'
miRNA:   3'- -UCGGCUGCUGgu-UGGGCggCCAgGGC- -5'
8215 3' -62.3 NC_001978.2 + 32090 0.67 0.281294
Target:  5'- uGCCGuucCGGCCGACCgUGCCGuGaugacCCCGg -3'
miRNA:   3'- uCGGCu--GCUGGUUGG-GCGGC-Ca----GGGC- -5'
8215 3' -62.3 NC_001978.2 + 29397 0.78 0.042937
Target:  5'- cGCCGACG-CUGACCUaggggGCCGGUCCUGg -3'
miRNA:   3'- uCGGCUGCuGGUUGGG-----CGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 17795 0.67 0.281294
Target:  5'- cGCCGAcaCGACCAACUaUGCCGcGUUUCa -3'
miRNA:   3'- uCGGCU--GCUGGUUGG-GCGGC-CAGGGc -5'
8215 3' -62.3 NC_001978.2 + 13220 0.67 0.288205
Target:  5'- uGGaccaCGACGGCCGACcuugCCGCCGGaacgCUCa -3'
miRNA:   3'- -UCg---GCUGCUGGUUG----GGCGGCCa---GGGc -5'
8215 3' -62.3 NC_001978.2 + 540 0.67 0.288205
Target:  5'- uGCCGcUGAagcCCGGaagguugCCGCCGGUCCUGa -3'
miRNA:   3'- uCGGCuGCU---GGUUg------GGCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 34857 0.66 0.301703
Target:  5'- cGGCUggGAUGACuCGACgCGCCGGUuguacucCCCa -3'
miRNA:   3'- -UCGG--CUGCUG-GUUGgGCGGCCA-------GGGc -5'
8215 3' -62.3 NC_001978.2 + 23321 0.66 0.302427
Target:  5'- -aUCGACGuguucACCGACCgGCCGaaGUCCCc -3'
miRNA:   3'- ucGGCUGC-----UGGUUGGgCGGC--CAGGGc -5'
8215 3' -62.3 NC_001978.2 + 39847 0.66 0.302427
Target:  5'- aGGCgCGuACGACgGACCCGuuGGcaggaagcacUUCCGg -3'
miRNA:   3'- -UCG-GC-UGCUGgUUGGGCggCC----------AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 20579 0.66 0.324761
Target:  5'- -cCCGGCGACCggUCUGCCcGaCCUGa -3'
miRNA:   3'- ucGGCUGCUGGuuGGGCGGcCaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 36647 0.66 0.332474
Target:  5'- uGCCGACGcugagcgggaaGCCcugagcGCCCcugaGCCGGUCgCGg -3'
miRNA:   3'- uCGGCUGC-----------UGGu-----UGGG----CGGCCAGgGC- -5'
8215 3' -62.3 NC_001978.2 + 11544 0.66 0.34032
Target:  5'- cGUgGGCGACgCuGCCCGCaCGGUgacggUCCGg -3'
miRNA:   3'- uCGgCUGCUG-GuUGGGCG-GCCA-----GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.