miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8215 3' -62.3 NC_001978.2 + 36121 1.07 0.000231
Target:  5'- aAGCCGACGACCAACCCGCCGGUCCCGu -3'
miRNA:   3'- -UCGGCUGCUGGUUGGGCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 29397 0.78 0.042937
Target:  5'- cGCCGACG-CUGACCUaggggGCCGGUCCUGg -3'
miRNA:   3'- uCGGCUGCuGGUUGGG-----CGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 5654 0.78 0.045427
Target:  5'- uGCCGcGCGGCUGACCCguGCCGGUaCCCGu -3'
miRNA:   3'- uCGGC-UGCUGGUUGGG--CGGCCA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 34408 0.78 0.048058
Target:  5'- uGGUCGGCGuCaCAACCCGCCGGauaCCCGc -3'
miRNA:   3'- -UCGGCUGCuG-GUUGGGCGGCCa--GGGC- -5'
8215 3' -62.3 NC_001978.2 + 39996 0.76 0.060145
Target:  5'- cGCCGACG-CUGACCCGaCCGG-CCCu -3'
miRNA:   3'- uCGGCUGCuGGUUGGGC-GGCCaGGGc -5'
8215 3' -62.3 NC_001978.2 + 22271 0.75 0.071092
Target:  5'- cGCCGACGG-CAACCCGacgccggaCCGGUCCgGg -3'
miRNA:   3'- uCGGCUGCUgGUUGGGC--------GGCCAGGgC- -5'
8215 3' -62.3 NC_001978.2 + 6806 0.74 0.091169
Target:  5'- uGCCGugaACG-CCGACCUuguGUCGGUCCCGg -3'
miRNA:   3'- uCGGC---UGCuGGUUGGG---CGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 15945 0.72 0.123025
Target:  5'- gGGCgCGACGggcGCCGACUCGacguucCCGGUCCCc -3'
miRNA:   3'- -UCG-GCUGC---UGGUUGGGC------GGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 35756 0.71 0.140699
Target:  5'- cGCCGucgcccagcuCGACCAcuCCCGCCGGUUCg- -3'
miRNA:   3'- uCGGCu---------GCUGGUu-GGGCGGCCAGGgc -5'
8215 3' -62.3 NC_001978.2 + 12901 0.71 0.140699
Target:  5'- cGGCCGACG-CC-ACCCGCCGacgugcUUCCGu -3'
miRNA:   3'- -UCGGCUGCuGGuUGGGCGGCc-----AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 17654 0.71 0.140699
Target:  5'- gAGCCGccaACGucGCCAACgUCGCCGGUCgCCu -3'
miRNA:   3'- -UCGGC---UGC--UGGUUG-GGCGGCCAG-GGc -5'
8215 3' -62.3 NC_001978.2 + 27213 0.71 0.148399
Target:  5'- cGGgCGACGuCCGaugcGCUCGCCGGuuucuUCCCGg -3'
miRNA:   3'- -UCgGCUGCuGGU----UGGGCGGCC-----AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 15483 0.71 0.152392
Target:  5'- uGCCGACGucgccccuGCCGACCCgacuacGCCGacguacguugccGUCCCGg -3'
miRNA:   3'- uCGGCUGC--------UGGUUGGG------CGGC------------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 33475 0.7 0.16067
Target:  5'- uAGCCGuaccCG-CCGuucaguucGCCgUGCCGGUCCCGg -3'
miRNA:   3'- -UCGGCu---GCuGGU--------UGG-GCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 2209 0.7 0.16496
Target:  5'- uGCCGACGA-CGACCCGCUuGagCCGg -3'
miRNA:   3'- uCGGCUGCUgGUUGGGCGGcCagGGC- -5'
8215 3' -62.3 NC_001978.2 + 27446 0.7 0.169352
Target:  5'- cGCUGACGcGCCuGCcgCCGCuacCGGUCCCGg -3'
miRNA:   3'- uCGGCUGC-UGGuUG--GGCG---GCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 23449 0.7 0.173849
Target:  5'- cGCCGACGAagagaugaucggUCAGCCgUGCgGGUgCCCGa -3'
miRNA:   3'- uCGGCUGCU------------GGUUGG-GCGgCCA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 27838 0.7 0.181738
Target:  5'- aAGCCGcCGACUAcguacugaagcacuGCCC-CCGGUUCCu -3'
miRNA:   3'- -UCGGCuGCUGGU--------------UGGGcGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 36774 0.7 0.183162
Target:  5'- gAGCCGACGccggagccugaGCCGgaGCCUGCCGacgacgacGUUCCGg -3'
miRNA:   3'- -UCGGCUGC-----------UGGU--UGGGCGGC--------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 36064 0.7 0.183162
Target:  5'- cGCCGACGugcuacacggGCCAcucACCCGCCGacaCCUGg -3'
miRNA:   3'- uCGGCUGC----------UGGU---UGGGCGGCca-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.