miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8215 3' -62.3 NC_001978.2 + 5451 0.66 0.34032
Target:  5'- cGGCCGucucgcCGACaauCCCGgCGGUcgCCCGa -3'
miRNA:   3'- -UCGGCu-----GCUGguuGGGCgGCCA--GGGC- -5'
8215 3' -62.3 NC_001978.2 + 9214 0.67 0.267868
Target:  5'- cGUCGGCGACgGAUUCGCCGuaaCCGg -3'
miRNA:   3'- uCGGCUGCUGgUUGGGCGGCcagGGC- -5'
8215 3' -62.3 NC_001978.2 + 32732 0.66 0.30026
Target:  5'- cGcCCGGCGGCuucccccagggcguCAGCgucaguCgGCCGGUCCCGg -3'
miRNA:   3'- uC-GGCUGCUG--------------GUUG------GgCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 38972 0.66 0.309738
Target:  5'- aAGCCGuaagGCG-CCuuCCCGCCGacGUaCCCGc -3'
miRNA:   3'- -UCGGC----UGCuGGuuGGGCGGC--CA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 15713 0.66 0.324761
Target:  5'- cGCCGuCGAgccCCAGCgaagCCGCCGGaaCCGu -3'
miRNA:   3'- uCGGCuGCU---GGUUG----GGCGGCCagGGC- -5'
8215 3' -62.3 NC_001978.2 + 9064 0.66 0.331697
Target:  5'- uGCCGACGGCgAuagcgccACCCGCagcaaGGgcaagCCCc -3'
miRNA:   3'- uCGGCUGCUGgU-------UGGGCGg----CCa----GGGc -5'
8215 3' -62.3 NC_001978.2 + 5654 0.78 0.045427
Target:  5'- uGCCGcGCGGCUGACCCguGCCGGUaCCCGu -3'
miRNA:   3'- uCGGC-UGCUGGUUGGG--CGGCCA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 34408 0.78 0.048058
Target:  5'- uGGUCGGCGuCaCAACCCGCCGGauaCCCGc -3'
miRNA:   3'- -UCGGCUGCuG-GUUGGGCGGCCa--GGGC- -5'
8215 3' -62.3 NC_001978.2 + 33475 0.7 0.16067
Target:  5'- uAGCCGuaccCG-CCGuucaguucGCCgUGCCGGUCCCGg -3'
miRNA:   3'- -UCGGCu---GCuGGU--------UGG-GCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 35207 0.67 0.281294
Target:  5'- aAGCCgGGCaACCAACuuGCCGuGUgCCu -3'
miRNA:   3'- -UCGG-CUGcUGGUUGggCGGC-CAgGGc -5'
8215 3' -62.3 NC_001978.2 + 11055 0.66 0.320198
Target:  5'- gGGUCGGCguucgucugcacguuGACCGucACgCCGCCGGaaCCCGa -3'
miRNA:   3'- -UCGGCUG---------------CUGGU--UG-GGCGGCCa-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 28097 0.66 0.34032
Target:  5'- gGGUCGACguagaacgcacuGAgCGGCUUgagGCCGGUCCCa -3'
miRNA:   3'- -UCGGCUG------------CUgGUUGGG---CGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 12901 0.71 0.140699
Target:  5'- cGGCCGACG-CC-ACCCGCCGacgugcUUCCGu -3'
miRNA:   3'- -UCGGCUGCuGGuUGGGCGGCc-----AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 27178 0.66 0.332474
Target:  5'- cGCCca-GGCCAcaauGCCCGCCGacuccgCCCGa -3'
miRNA:   3'- uCGGcugCUGGU----UGGGCGGCca----GGGC- -5'
8215 3' -62.3 NC_001978.2 + 32097 0.67 0.29525
Target:  5'- aAGCCGACGACgCGccCCCGCUcagCCUGa -3'
miRNA:   3'- -UCGGCUGCUG-GUu-GGGCGGccaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 17654 0.71 0.140699
Target:  5'- gAGCCGccaACGucGCCAACgUCGCCGGUCgCCu -3'
miRNA:   3'- -UCGGC---UGC--UGGUUG-GGCGGCCAG-GGc -5'
8215 3' -62.3 NC_001978.2 + 28184 0.66 0.332474
Target:  5'- aGGUCGAU-ACCcGCCCaGCCGGUUUCu -3'
miRNA:   3'- -UCGGCUGcUGGuUGGG-CGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 11735 0.68 0.242573
Target:  5'- uGCCGuacugagugaaGCGGCUuACCgggucguccggCGCCGGUCCCu -3'
miRNA:   3'- uCGGC-----------UGCUGGuUGG-----------GCGGCCAGGGc -5'
8215 3' -62.3 NC_001978.2 + 36774 0.7 0.183162
Target:  5'- gAGCCGACGccggagccugaGCCGgaGCCUGCCGacgacgacGUUCCGg -3'
miRNA:   3'- -UCGGCUGC-----------UGGU--UGGGCGGC--------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 36064 0.7 0.183162
Target:  5'- cGCCGACGugcuacacggGCCAcucACCCGCCGacaCCUGg -3'
miRNA:   3'- uCGGCUGC----------UGGU---UGGGCGGCca-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.