miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8215 3' -62.3 NC_001978.2 + 39996 0.76 0.060145
Target:  5'- cGCCGACG-CUGACCCGaCCGG-CCCu -3'
miRNA:   3'- uCGGCUGCuGGUUGGGC-GGCCaGGGc -5'
8215 3' -62.3 NC_001978.2 + 39847 0.66 0.302427
Target:  5'- aGGCgCGuACGACgGACCCGuuGGcaggaagcacUUCCGg -3'
miRNA:   3'- -UCG-GC-UGCUGgUUGGGCggCC----------AGGGC- -5'
8215 3' -62.3 NC_001978.2 + 38972 0.66 0.309738
Target:  5'- aAGCCGuaagGCG-CCuuCCCGCCGacGUaCCCGc -3'
miRNA:   3'- -UCGGC----UGCuGGuuGGGCGGC--CA-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 36774 0.7 0.183162
Target:  5'- gAGCCGACGccggagccugaGCCGgaGCCUGCCGacgacgacGUUCCGg -3'
miRNA:   3'- -UCGGCUGC-----------UGGU--UGGGCGGC--------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 36647 0.66 0.332474
Target:  5'- uGCCGACGcugagcgggaaGCCcugagcGCCCcugaGCCGGUCgCGg -3'
miRNA:   3'- uCGGCUGC-----------UGGu-----UGGG----CGGCCAGgGC- -5'
8215 3' -62.3 NC_001978.2 + 36121 1.07 0.000231
Target:  5'- aAGCCGACGACCAACCCGCCGGUCCCGu -3'
miRNA:   3'- -UCGGCUGCUGGUUGGGCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 36064 0.7 0.183162
Target:  5'- cGCCGACGugcuacacggGCCAcucACCCGCCGacaCCUGg -3'
miRNA:   3'- uCGGCUGC----------UGGU---UGGGCGGCca-GGGC- -5'
8215 3' -62.3 NC_001978.2 + 35756 0.71 0.140699
Target:  5'- cGCCGucgcccagcuCGACCAcuCCCGCCGGUUCg- -3'
miRNA:   3'- uCGGCu---------GCUGGUu-GGGCGGCCAGGgc -5'
8215 3' -62.3 NC_001978.2 + 35207 0.67 0.281294
Target:  5'- aAGCCgGGCaACCAACuuGCCGuGUgCCu -3'
miRNA:   3'- -UCGG-CUGcUGGUUGggCGGC-CAgGGc -5'
8215 3' -62.3 NC_001978.2 + 34857 0.66 0.301703
Target:  5'- cGGCUggGAUGACuCGACgCGCCGGUuguacucCCCa -3'
miRNA:   3'- -UCGG--CUGCUG-GUUGgGCGGCCA-------GGGc -5'
8215 3' -62.3 NC_001978.2 + 34644 0.68 0.242573
Target:  5'- gAGCCGACG-CCGAcugagcCCCGuuGcaCCCGg -3'
miRNA:   3'- -UCGGCUGCuGGUU------GGGCggCcaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 34408 0.78 0.048058
Target:  5'- uGGUCGGCGuCaCAACCCGCCGGauaCCCGc -3'
miRNA:   3'- -UCGGCUGCuG-GUUGGGCGGCCa--GGGC- -5'
8215 3' -62.3 NC_001978.2 + 33846 0.67 0.267868
Target:  5'- gGGCCGACGGCguuACCCG--GGUgCCGa -3'
miRNA:   3'- -UCGGCUGCUGgu-UGGGCggCCAgGGC- -5'
8215 3' -62.3 NC_001978.2 + 33475 0.7 0.16067
Target:  5'- uAGCCGuaccCG-CCGuucaguucGCCgUGCCGGUCCCGg -3'
miRNA:   3'- -UCGGCu---GCuGGU--------UGG-GCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 32732 0.66 0.30026
Target:  5'- cGcCCGGCGGCuucccccagggcguCAGCgucaguCgGCCGGUCCCGg -3'
miRNA:   3'- uC-GGCUGCUG--------------GUUG------GgCGGCCAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 32097 0.67 0.29525
Target:  5'- aAGCCGACGACgCGccCCCGCUcagCCUGa -3'
miRNA:   3'- -UCGGCUGCUG-GUu-GGGCGGccaGGGC- -5'
8215 3' -62.3 NC_001978.2 + 32090 0.67 0.281294
Target:  5'- uGCCGuucCGGCCGACCgUGCCGuGaugacCCCGg -3'
miRNA:   3'- uCGGCu--GCUGGUUGG-GCGGC-Ca----GGGC- -5'
8215 3' -62.3 NC_001978.2 + 29963 0.68 0.230689
Target:  5'- cGCCGACGACCuugCCGaCCGGcuUgCCGc -3'
miRNA:   3'- uCGGCUGCUGGuugGGC-GGCC--AgGGC- -5'
8215 3' -62.3 NC_001978.2 + 29442 0.67 0.281294
Target:  5'- cGCCGACGugUGACCCuccguggauuuGCCGaaccuaacGUUCCGu -3'
miRNA:   3'- uCGGCUGCugGUUGGG-----------CGGC--------CAGGGC- -5'
8215 3' -62.3 NC_001978.2 + 29397 0.78 0.042937
Target:  5'- cGCCGACG-CUGACCUaggggGCCGGUCCUGg -3'
miRNA:   3'- uCGGCUGCuGGUUGGG-----CGGCCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.