Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8216 | 3' | -54.5 | NC_001978.2 | + | 33783 | 0.66 | 0.693321 |
Target: 5'- gCGAAGCGugcugGGCGCuCGAC-GUCGAa- -3' miRNA: 3'- -GCUUCGUug---CCGCG-GCUGgUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 30230 | 0.66 | 0.693321 |
Target: 5'- aGAGcGCAACGGCaacGCCGggGCCGaCGAa- -3' miRNA: 3'- gCUU-CGUUGCCG---CGGC--UGGUaGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 20849 | 0.66 | 0.675398 |
Target: 5'- uCGGAcGCGACGGCaagggacucuuugcgGuCCgGACCGUCGAa- -3' miRNA: 3'- -GCUU-CGUUGCCG---------------C-GG-CUGGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 11886 | 0.66 | 0.670898 |
Target: 5'- uCGGAGCcuuCGGCGUucgUGACCGUCu--- -3' miRNA: 3'- -GCUUCGuu-GCCGCG---GCUGGUAGcuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 17308 | 0.66 | 0.670898 |
Target: 5'- aGggGCGuugguCGGCGuauCCGGCgGUCGGc- -3' miRNA: 3'- gCuuCGUu----GCCGC---GGCUGgUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 9219 | 0.66 | 0.670898 |
Target: 5'- cCGGAGCGACGGCcgaCGACaauggCGAa- -3' miRNA: 3'- -GCUUCGUUGCCGcg-GCUGgua--GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 38497 | 0.66 | 0.670898 |
Target: 5'- aCGAAGaCAA-GGCgGCCGACCuucagcgcgaaGUCGAg- -3' miRNA: 3'- -GCUUC-GUUgCCG-CGGCUGG-----------UAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 5537 | 0.66 | 0.670898 |
Target: 5'- cCGAcGC--CGGU-CCGGCCAUCGGUGa -3' miRNA: 3'- -GCUuCGuuGCCGcGGCUGGUAGCUAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 7261 | 0.66 | 0.659623 |
Target: 5'- aGAAGCGAacCGGCuCCGG-CGUCGAg- -3' miRNA: 3'- gCUUCGUU--GCCGcGGCUgGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 5210 | 0.66 | 0.648321 |
Target: 5'- aCGAAG-AACGGCGUCG-UCGUCGu-- -3' miRNA: 3'- -GCUUCgUUGCCGCGGCuGGUAGCuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 19851 | 0.66 | 0.648321 |
Target: 5'- uCGggGCGACgugcgcauuGGCGCCGuGCCGggggcCGAc- -3' miRNA: 3'- -GCuuCGUUG---------CCGCGGC-UGGUa----GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 34707 | 0.66 | 0.637003 |
Target: 5'- aCGggGCucaguCGGCGUCGGC--UCGAa- -3' miRNA: 3'- -GCuuCGuu---GCCGCGGCUGguAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 5620 | 0.66 | 0.637003 |
Target: 5'- aCGGAcGCGAcCGGCGCCaacgcuGCCuUCGGUGa -3' miRNA: 3'- -GCUU-CGUU-GCCGCGGc-----UGGuAGCUAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 33560 | 0.66 | 0.637003 |
Target: 5'- uGucGCccuuguCGGCGCCGugACCGUCGGg- -3' miRNA: 3'- gCuuCGuu----GCCGCGGC--UGGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 22431 | 0.67 | 0.625681 |
Target: 5'- cCGGAGUucGACGGCGCUG-CCGUUc--- -3' miRNA: 3'- -GCUUCG--UUGCCGCGGCuGGUAGcuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 19001 | 0.67 | 0.625681 |
Target: 5'- -uGGGCGACcGCGCUGACUAUCa--- -3' miRNA: 3'- gcUUCGUUGcCGCGGCUGGUAGcuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 8599 | 0.67 | 0.624549 |
Target: 5'- gCGAAGCAucggggcACGGCGCgaacCGGCCuuguucagggAUCGAg- -3' miRNA: 3'- -GCUUCGU-------UGCCGCG----GCUGG----------UAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 11525 | 0.67 | 0.614364 |
Target: 5'- -cAGGUcgAGCGGCGCCGACCGcUUGcGUGc -3' miRNA: 3'- gcUUCG--UUGCCGCGGCUGGU-AGC-UAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 36968 | 0.67 | 0.614364 |
Target: 5'- aCGGuGGCAG-GGUGCCGACCGgcagCGGc- -3' miRNA: 3'- -GCU-UCGUUgCCGCGGCUGGUa---GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 2583 | 0.67 | 0.614364 |
Target: 5'- aCGAcGGCAAccCGGCGUuggguCGGCaCAUCGGUAa -3' miRNA: 3'- -GCU-UCGUU--GCCGCG-----GCUG-GUAGCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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