Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8216 | 3' | -54.5 | NC_001978.2 | + | 13199 | 0.67 | 0.603064 |
Target: 5'- uGAAGCGuguCGGgGUCGGCagCGUCGAg- -3' miRNA: 3'- gCUUCGUu--GCCgCGGCUG--GUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 25808 | 0.67 | 0.591791 |
Target: 5'- cCGGacGGCAACGGCgucauaGCCGACCGauaCGGc- -3' miRNA: 3'- -GCU--UCGUUGCCG------CGGCUGGUa--GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 4450 | 0.67 | 0.580553 |
Target: 5'- uCGcAGCGACGGCGCCccugccCCAggaaCGAUGc -3' miRNA: 3'- -GCuUCGUUGCCGCGGcu----GGUa---GCUAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 33629 | 0.68 | 0.56936 |
Target: 5'- cCGAcGGUcACGGCGCCGACaagggCGAc- -3' miRNA: 3'- -GCU-UCGuUGCCGCGGCUGgua--GCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 13872 | 0.68 | 0.558222 |
Target: 5'- --cGGguGCGGCuCCGGCCGUCGcUAu -3' miRNA: 3'- gcuUCguUGCCGcGGCUGGUAGCuAU- -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 4385 | 0.68 | 0.547147 |
Target: 5'- uGggGCAGgGGCGCCGucGCUG-CGAc- -3' miRNA: 3'- gCuuCGUUgCCGCGGC--UGGUaGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 20375 | 0.68 | 0.514373 |
Target: 5'- gGAAGCcgaAGCGGCGaaGGCCgaaGUCGAg- -3' miRNA: 3'- gCUUCG---UUGCCGCggCUGG---UAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 9606 | 0.69 | 0.503623 |
Target: 5'- uGggGCugAACGGCGCCGagaugacgaagGCCAUUGc-- -3' miRNA: 3'- gCuuCG--UUGCCGCGGC-----------UGGUAGCuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 16767 | 0.69 | 0.503623 |
Target: 5'- gGGcAGCGgaACGGCGCCGACaugCGUUGAc- -3' miRNA: 3'- gCU-UCGU--UGCCGCGGCUG---GUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 37544 | 0.69 | 0.492973 |
Target: 5'- ---cGCAACGG-GCCGACCAcgUUGAa- -3' miRNA: 3'- gcuuCGUUGCCgCGGCUGGU--AGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 36729 | 0.69 | 0.482427 |
Target: 5'- aCGGAGCcggaGACGGCGCCccaGGCCGUUc--- -3' miRNA: 3'- -GCUUCG----UUGCCGCGG---CUGGUAGcuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 16329 | 0.69 | 0.461671 |
Target: 5'- aCGucGGCAGCGGUaaGCgUGACCGUCGGa- -3' miRNA: 3'- -GCu-UCGUUGCCG--CG-GCUGGUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 15943 | 0.69 | 0.461671 |
Target: 5'- aCGGGcGCGACgGGCGCCGAC--UCGAc- -3' miRNA: 3'- -GCUU-CGUUG-CCGCGGCUGguAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 24972 | 0.69 | 0.461671 |
Target: 5'- gCGAAGacgcuugccgaAugGGCGCUGACCuUCGGUc -3' miRNA: 3'- -GCUUCg----------UugCCGCGGCUGGuAGCUAu -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 14089 | 0.7 | 0.431448 |
Target: 5'- uGAAGCGGCGGCuuGCUG-CgGUCGAg- -3' miRNA: 3'- gCUUCGUUGCCG--CGGCuGgUAGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 35737 | 0.71 | 0.356878 |
Target: 5'- aCGggGCuuCGaGUGCCGACCGgucuUCGGg- -3' miRNA: 3'- -GCuuCGuuGC-CGCGGCUGGU----AGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 39297 | 0.75 | 0.218052 |
Target: 5'- aGAAGCcgGACGGCacGCCGACCA-CGAa- -3' miRNA: 3'- gCUUCG--UUGCCG--CGGCUGGUaGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 19525 | 0.76 | 0.195452 |
Target: 5'- aCGGAGCugacCGGCGCCGACCAcaUCa--- -3' miRNA: 3'- -GCUUCGuu--GCCGCGGCUGGU--AGcuau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 29214 | 0.76 | 0.179871 |
Target: 5'- -cGAGCGGCaGGCGCCGACCcgUGAc- -3' miRNA: 3'- gcUUCGUUG-CCGCGGCUGGuaGCUau -5' |
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8216 | 3' | -54.5 | NC_001978.2 | + | 37378 | 1.08 | 0.000995 |
Target: 5'- aCGAAGCAACGGCGCCGACCAUCGAUAg -3' miRNA: 3'- -GCUUCGUUGCCGCGGCUGGUAGCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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