miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8218 5' -48.1 NC_001978.2 + 33110 0.66 0.966382
Target:  5'- cUUCGGGCGUggcgugacGUCCUGGgcaagcguuggcACGu-UGCCg -3'
miRNA:   3'- cAAGCUUGCG--------UAGGACU------------UGCuuACGG- -5'
8218 5' -48.1 NC_001978.2 + 6480 0.66 0.960175
Target:  5'- -gUCGGGCGCcaauuucccccagCCUGGGCaagcuGAAUGCUg -3'
miRNA:   3'- caAGCUUGCGua-----------GGACUUG-----CUUACGG- -5'
8218 5' -48.1 NC_001978.2 + 22407 0.66 0.958508
Target:  5'- --cCGGACgGCAaCCggGAACcGAUGCCg -3'
miRNA:   3'- caaGCUUG-CGUaGGa-CUUGcUUACGG- -5'
8218 5' -48.1 NC_001978.2 + 24635 0.67 0.939171
Target:  5'- --gUGcGCGCA-CCgUGAGCGggUGCg -3'
miRNA:   3'- caaGCuUGCGUaGG-ACUUGCuuACGg -5'
8218 5' -48.1 NC_001978.2 + 5673 0.67 0.939171
Target:  5'- --cCGGuCGCGUCCguca-GGAUGCCg -3'
miRNA:   3'- caaGCUuGCGUAGGacuugCUUACGG- -5'
8218 5' -48.1 NC_001978.2 + 9263 0.67 0.932982
Target:  5'- --aUGGACGUcgcgacgGUCCUGGGCGAcgaaguuggGCCg -3'
miRNA:   3'- caaGCUUGCG-------UAGGACUUGCUua-------CGG- -5'
8218 5' -48.1 NC_001978.2 + 32125 0.67 0.931816
Target:  5'- -cUCaGGCGCGUCagcuugccgcauggCUGAACGAGgaaGCCg -3'
miRNA:   3'- caAGcUUGCGUAG--------------GACUUGCUUa--CGG- -5'
8218 5' -48.1 NC_001978.2 + 5342 0.68 0.914832
Target:  5'- ---gGAACGCucgacagCCUGAGCGAugaGCUg -3'
miRNA:   3'- caagCUUGCGua-----GGACUUGCUua-CGG- -5'
8218 5' -48.1 NC_001978.2 + 25452 0.69 0.869006
Target:  5'- -gUCGGcgGCAUCCUGggUGAGcgGCa -3'
miRNA:   3'- caAGCUugCGUAGGACuuGCUUa-CGg -5'
8218 5' -48.1 NC_001978.2 + 16977 0.69 0.851403
Target:  5'- -gUCGGACGCugCCUGAuucaGCGugucgggaAGUGCCg -3'
miRNA:   3'- caAGCUUGCGuaGGACU----UGC--------UUACGG- -5'
8218 5' -48.1 NC_001978.2 + 37288 0.69 0.851403
Target:  5'- --cCGAAgGCAUCCuUGAaguccaucaACGgAGUGCCu -3'
miRNA:   3'- caaGCUUgCGUAGG-ACU---------UGC-UUACGG- -5'
8218 5' -48.1 NC_001978.2 + 22748 0.7 0.842202
Target:  5'- --aCG-GCGCAcagcuucucUCCUucGAACGggUGCCu -3'
miRNA:   3'- caaGCuUGCGU---------AGGA--CUUGCuuACGG- -5'
8218 5' -48.1 NC_001978.2 + 22680 0.7 0.842202
Target:  5'- --cCGGGCGCGUCgCUGA----GUGCCg -3'
miRNA:   3'- caaGCUUGCGUAG-GACUugcuUACGG- -5'
8218 5' -48.1 NC_001978.2 + 31578 0.7 0.842202
Target:  5'- cGUgCGAAgGCGUUgaGGACGAAgacGCCg -3'
miRNA:   3'- -CAaGCUUgCGUAGgaCUUGCUUa--CGG- -5'
8218 5' -48.1 NC_001978.2 + 28175 0.7 0.82207
Target:  5'- -cUCGAcgugaucuauacgGCGCG-CCUGAACccGUGCCu -3'
miRNA:   3'- caAGCU-------------UGCGUaGGACUUGcuUACGG- -5'
8218 5' -48.1 NC_001978.2 + 32708 0.7 0.802984
Target:  5'- cUUCGAGCGCAagaaUCCg--GCGAcgGCUu -3'
miRNA:   3'- cAAGCUUGCGU----AGGacuUGCUuaCGG- -5'
8218 5' -48.1 NC_001978.2 + 26741 0.7 0.802984
Target:  5'- uGUUCGGGCGCAUCaCgaaGACGAc-GCCc -3'
miRNA:   3'- -CAAGCUUGCGUAG-Gac-UUGCUuaCGG- -5'
8218 5' -48.1 NC_001978.2 + 22084 0.7 0.802984
Target:  5'- uGUUUGAGCGCcugAUCCgGggUGAGUacgucgGCCg -3'
miRNA:   3'- -CAAGCUUGCG---UAGGaCuuGCUUA------CGG- -5'
8218 5' -48.1 NC_001978.2 + 19717 0.71 0.792636
Target:  5'- -gUCGAAgGCGUCCuUGcGCGggUcGCUg -3'
miRNA:   3'- caAGCUUgCGUAGG-ACuUGCuuA-CGG- -5'
8218 5' -48.1 NC_001978.2 + 23259 0.71 0.782096
Target:  5'- -gUCGAGCGCGaCggGAACGAccuUGCCc -3'
miRNA:   3'- caAGCUUGCGUaGgaCUUGCUu--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.