miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8219 5' -47.1 NC_001978.2 + 38857 1.17 0.002069
Target:  5'- cGGCGAAGAUUCUCGACACGAAGAACCu -3'
miRNA:   3'- -CCGCUUCUAAGAGCUGUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 38891 0.88 0.144922
Target:  5'- aGCGAAGAUUCUuugugCGACGCGucGAGCCg -3'
miRNA:   3'- cCGCUUCUAAGA-----GCUGUGCuuCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 23514 0.77 0.558864
Target:  5'- cGGCGAAGGagUaCGACGCGccGAACCc -3'
miRNA:   3'- -CCGCUUCUaaGaGCUGUGCuuCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 25566 0.76 0.616904
Target:  5'- gGGCGAAcGAcg-UCGACACGAAGucggGCCa -3'
miRNA:   3'- -CCGCUU-CUaagAGCUGUGCUUCu---UGG- -5'
8219 5' -47.1 NC_001978.2 + 17867 0.76 0.625091
Target:  5'- gGGCGAAGGgucgcugacgaagcUUCUCGGCaagcuucccGCGAAGGcgaaGCCg -3'
miRNA:   3'- -CCGCUUCU--------------AAGAGCUG---------UGCUUCU----UGG- -5'
8219 5' -47.1 NC_001978.2 + 19398 0.75 0.639131
Target:  5'- cGCGAAGAUcCUUGccgcugaggcggaGCGCGAAGAGCg -3'
miRNA:   3'- cCGCUUCUAaGAGC-------------UGUGCUUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 7173 0.73 0.74369
Target:  5'- aGGCGAacuugAGAUUgacguaCUCGACGCc-GGAGCCg -3'
miRNA:   3'- -CCGCU-----UCUAA------GAGCUGUGcuUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 38243 0.73 0.754721
Target:  5'- gGGCGAuug--CUcCGGCACGggGAAgCCg -3'
miRNA:   3'- -CCGCUucuaaGA-GCUGUGCuuCUU-GG- -5'
8219 5' -47.1 NC_001978.2 + 33939 0.73 0.786915
Target:  5'- cGGCGAAGAgaUCaCGGCGCuucuGAACCg -3'
miRNA:   3'- -CCGCUUCUa-AGaGCUGUGcuu-CUUGG- -5'
8219 5' -47.1 NC_001978.2 + 19509 0.72 0.7973
Target:  5'- cGGCc-GGAcgUUCGACACGGAGcuGACCg -3'
miRNA:   3'- -CCGcuUCUaaGAGCUGUGCUUC--UUGG- -5'
8219 5' -47.1 NC_001978.2 + 12639 0.72 0.80749
Target:  5'- aGGCGAAGGa---CGGCACGAAcGuAACCg -3'
miRNA:   3'- -CCGCUUCUaagaGCUGUGCUU-C-UUGG- -5'
8219 5' -47.1 NC_001978.2 + 19703 0.71 0.846051
Target:  5'- gGGcCGAAGcg-CUCGACuacgccaacGCGAAGAcuGCCg -3'
miRNA:   3'- -CC-GCUUCuaaGAGCUG---------UGCUUCU--UGG- -5'
8219 5' -47.1 NC_001978.2 + 17741 0.71 0.855085
Target:  5'- cGCGAAGGgcUUCggCGACGCGuacAAGGACg -3'
miRNA:   3'- cCGCUUCU--AAGa-GCUGUGC---UUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 4105 0.71 0.855085
Target:  5'- gGGCGAAG----UCG--GCGAAGAGCCg -3'
miRNA:   3'- -CCGCUUCuaagAGCugUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 20605 0.7 0.880566
Target:  5'- cGGCGGAGcg-CaaGACgACGAAGAACg -3'
miRNA:   3'- -CCGCUUCuaaGagCUG-UGCUUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 31703 0.7 0.896124
Target:  5'- cGGUGcGGAUUCgauucgcgCGACGCGcuGAACa -3'
miRNA:   3'- -CCGCuUCUAAGa-------GCUGUGCuuCUUGg -5'
8219 5' -47.1 NC_001978.2 + 4167 0.7 0.903455
Target:  5'- cGGCgGAAGAgc--CGG-ACGAAGAGCCg -3'
miRNA:   3'- -CCG-CUUCUaagaGCUgUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 7596 0.69 0.917196
Target:  5'- cGGCGAA----CUgGGCAUGAAGAccgACCg -3'
miRNA:   3'- -CCGCUUcuaaGAgCUGUGCUUCU---UGG- -5'
8219 5' -47.1 NC_001978.2 + 16321 0.69 0.929694
Target:  5'- cGGaCGGAGuugccccgCUCGACuccGCGAAGcGCCu -3'
miRNA:   3'- -CC-GCUUCuaa-----GAGCUG---UGCUUCuUGG- -5'
8219 5' -47.1 NC_001978.2 + 24481 0.69 0.935475
Target:  5'- gGGCGcua--UCUCGACGCGcuGAGCa -3'
miRNA:   3'- -CCGCuucuaAGAGCUGUGCuuCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.