miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8219 5' -47.1 NC_001978.2 + 2387 0.67 0.977967
Target:  5'- cGCGAAGAgcuacacacggcgCUCGACGuguacCGGgugcGGAACCu -3'
miRNA:   3'- cCGCUUCUaa-----------GAGCUGU-----GCU----UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 2908 0.67 0.962184
Target:  5'- gGGCGggGGcacuccccagcgCUCGACggcauugaggcGCGAgccugGGAACCg -3'
miRNA:   3'- -CCGCuuCUaa----------GAGCUG-----------UGCU-----UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 3816 0.66 0.98613
Target:  5'- cGGCGGcacgccaaAGAUUC---GCGCGAuuuccGGAACCu -3'
miRNA:   3'- -CCGCU--------UCUAAGagcUGUGCU-----UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 4105 0.71 0.855085
Target:  5'- gGGCGAAG----UCG--GCGAAGAGCCg -3'
miRNA:   3'- -CCGCUUCuaagAGCugUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 4167 0.7 0.903455
Target:  5'- cGGCgGAAGAgc--CGG-ACGAAGAGCCg -3'
miRNA:   3'- -CCG-CUUCUaagaGCUgUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 6530 0.66 0.983932
Target:  5'- cGCGAAGGUg--CGACuguuCGAAGcccugaaGGCCa -3'
miRNA:   3'- cCGCUUCUAagaGCUGu---GCUUC-------UUGG- -5'
8219 5' -47.1 NC_001978.2 + 7173 0.73 0.74369
Target:  5'- aGGCGAacuugAGAUUgacguaCUCGACGCc-GGAGCCg -3'
miRNA:   3'- -CCGCU-----UCUAA------GAGCUGUGcuUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 7596 0.69 0.917196
Target:  5'- cGGCGAA----CUgGGCAUGAAGAccgACCg -3'
miRNA:   3'- -CCGCUUcuaaGAgCUGUGCUUCU---UGG- -5'
8219 5' -47.1 NC_001978.2 + 8600 0.69 0.935475
Target:  5'- cGCGAAGcaUCggGGCACGGcgcGAACCg -3'
miRNA:   3'- cCGCUUCuaAGagCUGUGCUu--CUUGG- -5'
8219 5' -47.1 NC_001978.2 + 9154 0.66 0.981946
Target:  5'- cGGCGAAuccgUCgcCGACGCGAAcGaAGCCc -3'
miRNA:   3'- -CCGCUUcua-AGa-GCUGUGCUU-C-UUGG- -5'
8219 5' -47.1 NC_001978.2 + 10855 0.69 0.940944
Target:  5'- -cCGAAGAUUCgCGcCAUGGGuGGACCg -3'
miRNA:   3'- ccGCUUCUAAGaGCuGUGCUU-CUUGG- -5'
8219 5' -47.1 NC_001978.2 + 12580 0.66 0.987921
Target:  5'- cGGCGAuuGGUUC-----ACGAAGGACCc -3'
miRNA:   3'- -CCGCUu-CUAAGagcugUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 12639 0.72 0.80749
Target:  5'- aGGCGAAGGa---CGGCACGAAcGuAACCg -3'
miRNA:   3'- -CCGCUUCUaagaGCUGUGCUU-C-UUGG- -5'
8219 5' -47.1 NC_001978.2 + 16321 0.69 0.929694
Target:  5'- cGGaCGGAGuugccccgCUCGACuccGCGAAGcGCCu -3'
miRNA:   3'- -CC-GCUUCuaa-----GAGCUG---UGCUUCuUGG- -5'
8219 5' -47.1 NC_001978.2 + 17354 0.67 0.967423
Target:  5'- cGGCaacGggGGcggCUCGcACACGGAGAuuuGCUa -3'
miRNA:   3'- -CCG---CuuCUaa-GAGC-UGUGCUUCU---UGG- -5'
8219 5' -47.1 NC_001978.2 + 17741 0.71 0.855085
Target:  5'- cGCGAAGGgcUUCggCGACGCGuacAAGGACg -3'
miRNA:   3'- cCGCUUCU--AAGa-GCUGUGC---UUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 17867 0.76 0.625091
Target:  5'- gGGCGAAGGgucgcugacgaagcUUCUCGGCaagcuucccGCGAAGGcgaaGCCg -3'
miRNA:   3'- -CCGCUUCU--------------AAGAGCUG---------UGCUUCU----UGG- -5'
8219 5' -47.1 NC_001978.2 + 19398 0.75 0.639131
Target:  5'- cGCGAAGAUcCUUGccgcugaggcggaGCGCGAAGAGCg -3'
miRNA:   3'- cCGCUUCUAaGAGC-------------UGUGCUUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 19509 0.72 0.7973
Target:  5'- cGGCc-GGAcgUUCGACACGGAGcuGACCg -3'
miRNA:   3'- -CCGcuUCUaaGAGCUGUGCUUC--UUGG- -5'
8219 5' -47.1 NC_001978.2 + 19550 0.68 0.950959
Target:  5'- cGUGAAGggUCaCGGCACGgcGucACCg -3'
miRNA:   3'- cCGCUUCuaAGaGCUGUGCuuCu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.