Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8219 | 5' | -47.1 | NC_001978.2 | + | 19703 | 0.71 | 0.846051 |
Target: 5'- gGGcCGAAGcg-CUCGACuacgccaacGCGAAGAcuGCCg -3' miRNA: 3'- -CC-GCUUCuaaGAGCUG---------UGCUUCU--UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 20605 | 0.7 | 0.880566 |
Target: 5'- cGGCGGAGcg-CaaGACgACGAAGAACg -3' miRNA: 3'- -CCGCUUCuaaGagCUG-UGCUUCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 22558 | 0.66 | 0.98148 |
Target: 5'- gGGCGAAGAcguccgggccagUCUCGAC-CGcuuGAaaGCCc -3' miRNA: 3'- -CCGCUUCUa-----------AGAGCUGuGCuu-CU--UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 23076 | 0.69 | 0.940944 |
Target: 5'- uGGCGAAGcg-UUCGAUcugggccggagACGAAGAcaacaaGCCg -3' miRNA: 3'- -CCGCUUCuaaGAGCUG-----------UGCUUCU------UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 23514 | 0.77 | 0.558864 |
Target: 5'- cGGCGAAGGagUaCGACGCGccGAACCc -3' miRNA: 3'- -CCGCUUCUaaGaGCUGUGCuuCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 24481 | 0.69 | 0.935475 |
Target: 5'- gGGCGcua--UCUCGACGCGcuGAGCa -3' miRNA: 3'- -CCGCuucuaAGAGCUGUGCuuCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 25566 | 0.76 | 0.616904 |
Target: 5'- gGGCGAAcGAcg-UCGACACGAAGucggGCCa -3' miRNA: 3'- -CCGCUU-CUaagAGCUGUGCUUCu---UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 26420 | 0.69 | 0.940944 |
Target: 5'- aGGCgGAAGAgu-UCGACGCGAAcgcgcaccuguuGAGCUu -3' miRNA: 3'- -CCG-CUUCUaagAGCUGUGCUU------------CUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 28385 | 0.69 | 0.939336 |
Target: 5'- cGGCGAAGggUgUCGACguacucaagaucaaGCGc-GAGCCc -3' miRNA: 3'- -CCGCUUCuaAgAGCUG--------------UGCuuCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 30920 | 0.67 | 0.973681 |
Target: 5'- cGGUGAcGGGUg--CGACAUGAAGGcaugugcGCCc -3' miRNA: 3'- -CCGCU-UCUAagaGCUGUGCUUCU-------UGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 31513 | 0.66 | 0.984142 |
Target: 5'- cGUGAAGGUg--UGGCGCGuAGGACa -3' miRNA: 3'- cCGCUUCUAagaGCUGUGCuUCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 31703 | 0.7 | 0.896124 |
Target: 5'- cGGUGcGGAUUCgauucgcgCGACGCGcuGAACa -3' miRNA: 3'- -CCGCuUCUAAGa-------GCUGUGCuuCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 32640 | 0.67 | 0.9766 |
Target: 5'- gGGCGAAgGGUUCagcgccgUCGugGC-AAGAACa -3' miRNA: 3'- -CCGCUU-CUAAG-------AGCugUGcUUCUUGg -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 33939 | 0.73 | 0.786915 |
Target: 5'- cGGCGAAGAgaUCaCGGCGCuucuGAACCg -3' miRNA: 3'- -CCGCUUCUa-AGaGCUGUGcuu-CUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 35582 | 0.67 | 0.973984 |
Target: 5'- cGGCGccccuGAgcgUCGGCGCGAccgaagaccccGGGACCg -3' miRNA: 3'- -CCGCuu---CUaagAGCUGUGCU-----------UCUUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 35820 | 0.66 | 0.981946 |
Target: 5'- cGGC-AAGGUUCUUGACGaccuGGGcGCCg -3' miRNA: 3'- -CCGcUUCUAAGAGCUGUgc--UUCuUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 36454 | 0.67 | 0.967423 |
Target: 5'- uGGCGAAGuacggCGugACGAAGcugggcgcguGGCCc -3' miRNA: 3'- -CCGCUUCuaagaGCugUGCUUC----------UUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 37850 | 0.66 | 0.979528 |
Target: 5'- gGGCGAAGugccccUUgUCGGCG-GggGcGCCg -3' miRNA: 3'- -CCGCUUCu-----AAgAGCUGUgCuuCuUGG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 38243 | 0.73 | 0.754721 |
Target: 5'- gGGCGAuug--CUcCGGCACGggGAAgCCg -3' miRNA: 3'- -CCGCUucuaaGA-GCUGUGCuuCUU-GG- -5' |
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8219 | 5' | -47.1 | NC_001978.2 | + | 38523 | 0.67 | 0.970836 |
Target: 5'- cGCGAAG----UCGAgCGCGAcgGGGGCCg -3' miRNA: 3'- cCGCUUCuaagAGCU-GUGCU--UCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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