miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8219 5' -47.1 NC_001978.2 + 38891 0.88 0.144922
Target:  5'- aGCGAAGAUUCUuugugCGACGCGucGAGCCg -3'
miRNA:   3'- cCGCUUCUAAGA-----GCUGUGCuuCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 38857 1.17 0.002069
Target:  5'- cGGCGAAGAUUCUCGACACGAAGAACCu -3'
miRNA:   3'- -CCGCUUCUAAGAGCUGUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 38523 0.67 0.970836
Target:  5'- cGCGAAG----UCGAgCGCGAcgGGGGCCg -3'
miRNA:   3'- cCGCUUCuaagAGCU-GUGCU--UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 38243 0.73 0.754721
Target:  5'- gGGCGAuug--CUcCGGCACGggGAAgCCg -3'
miRNA:   3'- -CCGCUucuaaGA-GCUGUGCuuCUU-GG- -5'
8219 5' -47.1 NC_001978.2 + 37850 0.66 0.979528
Target:  5'- gGGCGAAGugccccUUgUCGGCG-GggGcGCCg -3'
miRNA:   3'- -CCGCUUCu-----AAgAGCUGUgCuuCuUGG- -5'
8219 5' -47.1 NC_001978.2 + 36454 0.67 0.967423
Target:  5'- uGGCGAAGuacggCGugACGAAGcugggcgcguGGCCc -3'
miRNA:   3'- -CCGCUUCuaagaGCugUGCUUC----------UUGG- -5'
8219 5' -47.1 NC_001978.2 + 35820 0.66 0.981946
Target:  5'- cGGC-AAGGUUCUUGACGaccuGGGcGCCg -3'
miRNA:   3'- -CCGcUUCUAAGAGCUGUgc--UUCuUGG- -5'
8219 5' -47.1 NC_001978.2 + 35582 0.67 0.973984
Target:  5'- cGGCGccccuGAgcgUCGGCGCGAccgaagaccccGGGACCg -3'
miRNA:   3'- -CCGCuu---CUaagAGCUGUGCU-----------UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 33939 0.73 0.786915
Target:  5'- cGGCGAAGAgaUCaCGGCGCuucuGAACCg -3'
miRNA:   3'- -CCGCUUCUa-AGaGCUGUGcuu-CUUGG- -5'
8219 5' -47.1 NC_001978.2 + 32640 0.67 0.9766
Target:  5'- gGGCGAAgGGUUCagcgccgUCGugGC-AAGAACa -3'
miRNA:   3'- -CCGCUU-CUAAG-------AGCugUGcUUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 31703 0.7 0.896124
Target:  5'- cGGUGcGGAUUCgauucgcgCGACGCGcuGAACa -3'
miRNA:   3'- -CCGCuUCUAAGa-------GCUGUGCuuCUUGg -5'
8219 5' -47.1 NC_001978.2 + 31513 0.66 0.984142
Target:  5'- cGUGAAGGUg--UGGCGCGuAGGACa -3'
miRNA:   3'- cCGCUUCUAagaGCUGUGCuUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 30920 0.67 0.973681
Target:  5'- cGGUGAcGGGUg--CGACAUGAAGGcaugugcGCCc -3'
miRNA:   3'- -CCGCU-UCUAagaGCUGUGCUUCU-------UGG- -5'
8219 5' -47.1 NC_001978.2 + 28385 0.69 0.939336
Target:  5'- cGGCGAAGggUgUCGACguacucaagaucaaGCGc-GAGCCc -3'
miRNA:   3'- -CCGCUUCuaAgAGCUG--------------UGCuuCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 26420 0.69 0.940944
Target:  5'- aGGCgGAAGAgu-UCGACGCGAAcgcgcaccuguuGAGCUu -3'
miRNA:   3'- -CCG-CUUCUaagAGCUGUGCUU------------CUUGG- -5'
8219 5' -47.1 NC_001978.2 + 25566 0.76 0.616904
Target:  5'- gGGCGAAcGAcg-UCGACACGAAGucggGCCa -3'
miRNA:   3'- -CCGCUU-CUaagAGCUGUGCUUCu---UGG- -5'
8219 5' -47.1 NC_001978.2 + 24481 0.69 0.935475
Target:  5'- gGGCGcua--UCUCGACGCGcuGAGCa -3'
miRNA:   3'- -CCGCuucuaAGAGCUGUGCuuCUUGg -5'
8219 5' -47.1 NC_001978.2 + 23514 0.77 0.558864
Target:  5'- cGGCGAAGGagUaCGACGCGccGAACCc -3'
miRNA:   3'- -CCGCUUCUaaGaGCUGUGCuuCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 23076 0.69 0.940944
Target:  5'- uGGCGAAGcg-UUCGAUcugggccggagACGAAGAcaacaaGCCg -3'
miRNA:   3'- -CCGCUUCuaaGAGCUG-----------UGCUUCU------UGG- -5'
8219 5' -47.1 NC_001978.2 + 22558 0.66 0.98148
Target:  5'- gGGCGAAGAcguccgggccagUCUCGAC-CGcuuGAaaGCCc -3'
miRNA:   3'- -CCGCUUCUa-----------AGAGCUGuGCuu-CU--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.