miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8221 3' -57.1 NC_001978.2 + 39340 1.07 0.000583
Target:  5'- cAUUCAGCGCGACCCGAUCACGCUCCGg -3'
miRNA:   3'- -UAAGUCGCGCUGGGCUAGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 1709 0.66 0.551831
Target:  5'- cGUUCAGCGCGACgUGAUC-CGgUa-- -3'
miRNA:   3'- -UAAGUCGCGCUGgGCUAGuGCgAggc -5'
8221 3' -57.1 NC_001978.2 + 35451 0.66 0.551831
Target:  5'- uUUCGGCGCG-UCCGuaCugGCgUCCGc -3'
miRNA:   3'- uAAGUCGCGCuGGGCuaGugCG-AGGC- -5'
8221 3' -57.1 NC_001978.2 + 12396 0.66 0.551831
Target:  5'- ---aGGCGuCGACCaCGuUCACGCUgaCCGu -3'
miRNA:   3'- uaagUCGC-GCUGG-GCuAGUGCGA--GGC- -5'
8221 3' -57.1 NC_001978.2 + 33315 0.66 0.551831
Target:  5'- --gCAGCGCGAaCCGAaCcCGUUCCu -3'
miRNA:   3'- uaaGUCGCGCUgGGCUaGuGCGAGGc -5'
8221 3' -57.1 NC_001978.2 + 12511 0.66 0.529147
Target:  5'- -gUCGGCGUu-CCCGGUCggcuucacgcuguACGaCUCCGg -3'
miRNA:   3'- uaAGUCGCGcuGGGCUAG-------------UGC-GAGGC- -5'
8221 3' -57.1 NC_001978.2 + 18935 0.66 0.498412
Target:  5'- gGUUCGG-GUGACUCGAcccggCACGCUgagCCGg -3'
miRNA:   3'- -UAAGUCgCGCUGGGCUa----GUGCGA---GGC- -5'
8221 3' -57.1 NC_001978.2 + 19883 0.67 0.477686
Target:  5'- ---gGGC-CGACgCGAUucaCGCGCUCCGg -3'
miRNA:   3'- uaagUCGcGCUGgGCUA---GUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 24038 0.67 0.451398
Target:  5'- -gUCGGCgaccugaucaauuacGCGACCCGuugcgggaAUCGCGC-CCGu -3'
miRNA:   3'- uaAGUCG---------------CGCUGGGC--------UAGUGCGaGGC- -5'
8221 3' -57.1 NC_001978.2 + 19535 0.67 0.447424
Target:  5'- --cCGGCGcCGACCacAUCACGC-CCGg -3'
miRNA:   3'- uaaGUCGC-GCUGGgcUAGUGCGaGGC- -5'
8221 3' -57.1 NC_001978.2 + 8015 0.67 0.447424
Target:  5'- uUUCAGCG-GaACgUGcgCGCGCUCCGc -3'
miRNA:   3'- uAAGUCGCgC-UGgGCuaGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 36482 0.76 0.126119
Target:  5'- ----cGCGUGGCCCG-UCGCGUUCCGa -3'
miRNA:   3'- uaaguCGCGCUGGGCuAGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 25967 0.72 0.243111
Target:  5'- -gUgAGCGCGACCCGggCAaGUUCCc -3'
miRNA:   3'- uaAgUCGCGCUGGGCuaGUgCGAGGc -5'
8221 3' -57.1 NC_001978.2 + 13574 0.7 0.291211
Target:  5'- gGUUCGGCGuCGACuCCGuUCGCGCUgaCGc -3'
miRNA:   3'- -UAAGUCGC-GCUG-GGCuAGUGCGAg-GC- -5'
8221 3' -57.1 NC_001978.2 + 18613 0.7 0.294173
Target:  5'- -aUCAGCGCgucgcauucgcuGACCCGuugaaggcggcaGCGCUCCGa -3'
miRNA:   3'- uaAGUCGCG------------CUGGGCuag---------UGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 25563 0.7 0.306257
Target:  5'- --aCGGCGUGACCCG-UgGCGC-CCa -3'
miRNA:   3'- uaaGUCGCGCUGGGCuAgUGCGaGGc -5'
8221 3' -57.1 NC_001978.2 + 17249 0.7 0.321892
Target:  5'- -gUCGGCGCacuACCCGcgCACgGCUUCGu -3'
miRNA:   3'- uaAGUCGCGc--UGGGCuaGUG-CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 16044 0.68 0.427852
Target:  5'- ---aAGgGUGACCCGGguaCGgGCUCCGu -3'
miRNA:   3'- uaagUCgCGCUGGGCUa--GUgCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 20455 0.72 0.218709
Target:  5'- --cCGGCGCGACUCGAcuucggccuUCGCcGCUUCGg -3'
miRNA:   3'- uaaGUCGCGCUGGGCU---------AGUG-CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 37798 0.66 0.540989
Target:  5'- --gCAGCGCGcaauaGCCCu-UCAUgGCUCCGu -3'
miRNA:   3'- uaaGUCGCGC-----UGGGcuAGUG-CGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.